Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P24170_001 | Banana | nucleus | 86.22 | 82.35 |
| GSMUA_Achr11P... | Banana | nucleus | 49.56 | 74.12 |
| KXG29049 | Sorghum | nucleus | 60.7 | 54.62 |
| HORVU4Hr1G032440.7 | Barley | nucleus | 60.7 | 53.49 |
| TraesCS4B01G150200.1 | Wheat | nucleus | 60.7 | 53.21 |
| TraesCS4D01G147000.1 | Wheat | nucleus | 60.41 | 52.96 |
| TraesCS4A01G169000.1 | Wheat | nucleus | 59.82 | 52.71 |
| Os11t0658700-01 | Rice | nucleus | 60.41 | 52.55 |
| VIT_17s0000g06340.t01 | Wine grape | nucleus | 55.13 | 50.13 |
| KRH50568 | Soybean | nucleus | 49.56 | 48.01 |
| KRH03491 | Soybean | nucleus | 47.8 | 46.05 |
| KRH56901 | Soybean | nucleus | 45.45 | 45.86 |
| KRG89584 | Soybean | nucleus | 47.8 | 44.05 |
| PGSC0003DMT400050265 | Potato | nucleus | 17.89 | 42.96 |
| CDY58993 | Canola | nucleus | 44.87 | 40.37 |
| Bra031049.1-P | Field mustard | nucleus | 44.87 | 40.05 |
| CDY26732 | Canola | nucleus | 42.82 | 38.83 |
| Bra004393.1-P | Field mustard | nucleus | 39.0 | 38.11 |
| AT1G69540.2 | Thale cress | nucleus | 40.76 | 37.87 |
| Bra025685.1-P | Field mustard | nucleus | 41.06 | 36.94 |
| CDX95922 | Canola | mitochondrion | 39.3 | 36.71 |
| Bra017404.1-P | Field mustard | nucleus | 40.18 | 36.15 |
| AT1G18750.3 | Thale cress | nucleus | 43.7 | 36.08 |
| Bra016544.1-P | Field mustard | nucleus | 32.26 | 35.95 |
| Bra024792.1-P | Field mustard | nucleus | 39.3 | 35.54 |
| AT2G03060.2 | Thale cress | nucleus | 40.18 | 35.49 |
| CDY45183 | Canola | nucleus | 39.0 | 35.28 |
| CDX96703 | Canola | nucleus | 43.7 | 34.17 |
| KRH70750 | Soybean | nucleus | 22.29 | 33.63 |
| CDY03021 | Canola | nucleus | 38.42 | 33.42 |
| Zm00001d048697_P003 | Maize | nucleus, plasma membrane, plastid | 47.8 | 33.2 |
| KRH74891 | Soybean | endoplasmic reticulum, golgi, mitochondrion, vacuole | 36.36 | 32.21 |
| CDY40939 | Canola | golgi, mitochondrion, plasma membrane, plastid | 39.3 | 32.13 |
| CDY60833 | Canola | nucleus | 39.88 | 32.08 |
| Solyc03g115910.1.1 | Tomato | plastid | 36.95 | 30.22 |
| CDY26727 | Canola | extracellular | 18.48 | 30.14 |
| CDX83816 | Canola | nucleus | 44.57 | 29.34 |
| CDY17422 | Canola | nucleus | 40.47 | 28.11 |
| GSMUA_Achr3P04450_001 | Banana | nucleus | 24.05 | 23.77 |
| CDY64870 | Canola | nucleus | 15.25 | 21.85 |
| GSMUA_Achr9P13010_001 | Banana | cytosol, nucleus, plasma membrane | 24.93 | 13.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| EnsemblPlantsGene:GSMUA_Achr2G01740_001 | EnsemblPlants:GSMUA_Achr2P01740_001 | EnsemblPlants:GSMUA_Achr2T01740_001 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0S4B5 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF169 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000296CBEB | : |
Description
OsMADS68 - MADS-box family gene with MIKC* type-box, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G01740_001]
Coordinates
chr2:-:7572182..7575782
Molecular Weight (calculated)
38530.1 Da
IEP (calculated)
5.416
GRAVY (calculated)
-0.607
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVKLKIKR LENSSSRQVT YSKRKAGVMK KAKELSILCD IDLVLLMFAP NGKPTVCVGD RSNIEEVVAR FSQVSQQERA KRKLESLEAL KKTFKKLDHD
101: VNIQEFLGPS TQTVEELASY LGSLHGQLLD VQKRLSYWAD PDEISDIDHI RAMEQSLKES LSRIQAHKEN FGRQLISVDC CGQFQNDIHL HSGFNYEQGA
201: SPVSWLHNND GQQLMLPQDS NLLSQRDIGC SADTPLQNCN AYFSTGEQTD ANEQVQEGSL HEYSPNACLR LQLGGQYPYQ SYCQNLVSER TFKPDAENSL
301: QESTIDYQVN HFDASFQNWA STSATCGVSM YDEQSYTQVS F
101: VNIQEFLGPS TQTVEELASY LGSLHGQLLD VQKRLSYWAD PDEISDIDHI RAMEQSLKES LSRIQAHKEN FGRQLISVDC CGQFQNDIHL HSGFNYEQGA
201: SPVSWLHNND GQQLMLPQDS NLLSQRDIGC SADTPLQNCN AYFSTGEQTD ANEQVQEGSL HEYSPNACLR LQLGGQYPYQ SYCQNLVSER TFKPDAENSL
301: QESTIDYQVN HFDASFQNWA STSATCGVSM YDEQSYTQVS F
001: MGRVKLKIKR LESTSNRQVT YTKRKNGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQQPN
101: VNIHDFLGAR NQTIEGLSNQ VAIYQAQLME CHRRLSCWTN IDRIENTEHL DLLEESLRKS IERIQIHKEH YRKNQLLPIE CATTQFHSGI QLPMAMGGNS
201: SMQEAHSMSW LPDNDHQQTI LPGDSSFLPH REMDGSIPVY SSCFFESTKP EDQICSNPGQ QFEQLEQQGN GCLGLQQLGE EYSYPTPFGT TLGMEEDQEK
301: KIKSEMELNN LQQQQQQQQQ QQQQDPSMYD PMANNNGGCF QIPHDQSMFV NDHHHHHHHH HQNWVPDSMF GQTSYNQQPN
Arabidopsis Description
AGL65AGAMOUS-like 65 [Source:TAIR;Acc:AT1G18750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.