Factsheet for GSMUA_Achr9P13010_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00750_001
GSMUA_Achr2P06250_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P18400_001
GSMUA_Achr2P18410_001
GSMUA_Achr3P05500_001
GSMUA_Achr3P08500_001
GSMUA_Achr3P15930_001
GSMUA_Achr3P24560_001
GSMUA_Achr4P14460_001
GSMUA_Achr4P30120_001
GSMUA_Achr7P26700_001
GSMUA_Achr8P06150_001
GSMUA_Achr8P28100_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77980.1	GSMUA_Achr2P06250_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr3P15930_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr4P14460_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr7P26700_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr8P28100_001	AT2G03710.1	15805477
AT1G77980.1	GSMUA_Achr1P00750_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr2P10250_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr4P30120_001	AT2G45650.1	15805477
AT1G77980.1	GSMUA_Achr2P18400_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr2P18410_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P05500_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P08500_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr3P24560_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_Achr8P06150_001	AT5G27960.1	15805477
AT1G77980.1	GSMUA_AchrUn_...	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04450_001	Banana	nucleus	43.24	79.71
TraesCS4A01G290700.1	Wheat	nucleus	16.04	66.23
VIT_19s0014g00310.t01	Wine grape	nucleus	6.92	56.41
VIT_07s0031g01140.t01	Wine grape	nucleus	29.4	55.33
Os06t0223300-01	Rice	nucleus	27.83	49.17
HORVU4Hr1G003610.5	Barley	nucleus	23.27	48.52
TraesCS4B01G023300.1	Wheat	nucleus	23.43	48.38
KXG19627	Sorghum	nucleus	27.99	47.72
Os08t0494100-02	Rice	nucleus	25.16	47.48
Zm00001d044850_P001	Maize	nucleus	20.6	47.12
KRH18859	Soybean	nucleus	24.53	46.71
KRH16660	Soybean	nucleus	25.47	46.69
AT1G77950.4	Thale cress	nucleus	18.4	46.43
TraesCS4D01G021100.1	Wheat	nucleus	25.63	46.18
Bra015645.1-P	Field mustard	nucleus	15.09	45.93
CDX87492	Canola	nucleus	16.51	45.85
CDY01295	Canola	nucleus	22.17	45.34
Zm00001d037212_P001	Maize	nucleus	25.94	44.84
CDY41491	Canola	nucleus	23.58	44.38
CDX91664	Canola	nucleus	23.58	44.38
Bra012308.1-P	Field mustard	nucleus	23.27	44.18
CDY00423	Canola	nucleus	23.11	43.88
CDX88401	Canola	nucleus	16.67	43.44
Bra016386.1-P	Field mustard	nucleus	21.23	43.41
AT1G22130.1	Thale cress	nucleus	22.8	43.28
CDX88402	Canola	nucleus	22.33	43.16
CDX87489	Canola	nucleus	22.17	42.86
Bra015643.1-P	Field mustard	nucleus	22.17	42.86
AT1G77980.1	Thale cress	nucleus	22.01	42.17
GSMUA_Achr11P...	Banana	nucleus	10.53	29.39
Solyc05g051830.2.1	Tomato	nucleus	15.25	24.94
GSMUA_Achr2P01740_001	Banana	nucleus	13.36	24.93
GSMUA_Achr3P24170_001	Banana	nucleus	13.21	23.53

Protein Annotations

MapMan:15.5.14	Gene3D:3.30.750.24	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008271	GO:GO:0008272
GO:GO:0009058	GO:GO:0009987	GO:GO:0015116	GO:GO:0016020	GO:GO:0016021	GO:GO:0045944
GO:GO:0046983	GO:GO:0055085	GO:GO:1902358	EnsemblPlantsGene:GSMUA_Achr9G13010_001	EnsemblPlants:GSMUA_Achr9P13010_001	EnsemblPlants:GSMUA_Achr9T13010_001
InterPro:High_sul_transp	InterPro:IPR002100	InterPro:IPR002645	InterPro:IPR036513	InterPro:IPR036879	UniProt:M0TZV9
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF00916	PFAM:PF01740	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS50801	PANTHER:PTHR11814	PANTHER:PTHR11814:SF65	InterPro:SLC26A/SulP_dom	InterPro:SLC26A/SulP_fam
SMART:SM00432	SUPFAM:SSF55455	InterPro:STAS_dom	InterPro:STAS_dom_sf	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
TMHMM:TMhelix	UniParc:UPI00029618A8	SEG:seg	:	:	:

Description

OsMADS63 - MADS-box family gene with MIKC* type-box, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G13010_001]

Coordinates

chr9:-:8442103..8446330

Molecular Weight (calculated)

71398.8 Da

IEP (calculated)

7.220

GRAVY (calculated)

-0.029

Length

636 amino acids

Sequence
(BLAST)

001: MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR RRIEDVLARY VNLPENDRGG VIQNREFLIR ALKKLKCEND
101: MAALANPTVV NSNVEELQQE IGRYQQQLQL SEQRLRFFEP DHLSFTSMRD LESCEKFVME ALQRVTARKE YLLSHHLSSY DPSASSMQER LPDPYGSEMV
201: QWVPEGATNS GHQIFVGSDP LMDLREHGIY ESMAPQGMGL PVDPCTAGCH VSGQHEVSWH QAYTSTELLS ALIPSPPYPL IQHPMAPTEL PTLVPQEQVE
301: ATAACSHLPM DDGGASNNTY DGNAAPVHVS PYRIPYVEGK KKKSLFWVPA IAPLIYVILA TFLVYITHAG NQGVQIVNHI KKGINPSSLS RIYFAGPNAE
401: KGFRIGIICG MIALTEELCC FEGLPVGWKQ GNGGTWIHEC CFLNDLMLCC NRFILKISCR LHGWLPNMVM SAMVFLTLLL ITPVFKYTPS AILASIIISA
501: VIGLVDYQAA LLIWKIDKLD FATIVPGIII VRVDSAIYFS NSNYVRKRIL RWFADEEEKE EAKGKPRIDL LIVDRTAIES SVHSDCFICC RRTSNIFHSF
601: SFMQLILANP GPVAIEKLEA SQFTELTRSS SLLLMQ

Best Arabidopsis Sequence Match ( AT1G22130.1 )
(BLAST)

001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

Arabidopsis Description

AGL104Agamous-like MADS-box protein AGL104 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.