Factsheet for GSMUA_Achr2P06250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03630_001
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P11820_001
GSMUA_Achr2P12680_001
GSMUA_Achr2P13650_001
GSMUA_Achr2P18400_001
GSMUA_Achr2P18410_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P04450_001
GSMUA_Achr3P05500_001
GSMUA_Achr3P08500_001
GSMUA_Achr3P24560_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P25390_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P22570_001
GSMUA_Achr4P23540_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P10250_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P04330_001
GSMUA_Achr8P06150_001
GSMUA_Achr9P13010_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	GSMUA_Achr2P18400_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr2P18410_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P05500_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P08500_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr3P24560_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr8P06150_001	AT1G31630.1	15805477
AT2G03710.1	GSMUA_AchrUn_...	AT1G31630.1	15805477
AT2G03710.1	GSMUA_Achr2P18400_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr2P18410_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P05500_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P08500_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr3P24560_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr8P06150_001	AT1G31640.1	15805477
AT2G03710.1	GSMUA_AchrUn_...	AT1G31640.1	15805477
AT2G03710.1	GSMUA_Achr10P...	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr2P13650_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P02280_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P25280_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P30440_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr4P23540_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr6P00050_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr7P00460_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr8P04330_001	AT1G69120.1	15805477
AT2G03710.1	GSMUA_Achr3P04450_001	AT1G77980.1	15805477
AT2G03710.1	GSMUA_Achr9P13010_001	AT1G77980.1	15805477
AT2G03710.1	GSMUA_Achr1P03630_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr2P11820_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr5P10250_001	AT2G45660.1	15805477
AT2G03710.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G03710.1	GSMUA_Achr10P...	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr2P13650_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P02280_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P25280_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr3P30440_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr4P23540_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr6P00050_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr7P00460_001	AT5G60910.1	15805477
AT2G03710.1	GSMUA_Achr8P04330_001	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28100_001	Banana	nucleus	71.68	67.5
GSMUA_Achr3P15930_001	Banana	nucleus	69.47	65.42
Solyc03g114840.2.1	Tomato	nucleus	59.29	54.47
PGSC0003DMT400063315	Potato	nucleus	58.85	54.06
GSMUA_Achr7P26700_001	Banana	nucleus	55.75	52.94
VIT_17s0000g05000.t01	Wine grape	nucleus	57.08	52.44
GSMUA_Achr11P...	Banana	nucleus	53.54	51.49
GSMUA_Achr9P01370_001	Banana	nucleus	55.31	51.44
GSMUA_Achr4P14460_001	Banana	nucleus	53.1	50.0
KRH70973	Soybean	nucleus	49.12	45.49
KRH75123	Soybean	nucleus	49.12	45.12
GSMUA_Achr4P30120_001	Banana	nucleus	46.46	44.68
GSMUA_Achr1P00750_001	Banana	nucleus	46.46	43.39
GSMUA_Achr2P04350_001	Banana	nucleus	46.02	43.33
GSMUA_Achr1P24060_001	Banana	nucleus	46.02	42.62
GSMUA_Achr2P10250_001	Banana	nucleus	45.58	42.56
Bra025126.1-P	Field mustard	nucleus	48.23	42.41
CDY04164	Canola	nucleus	48.23	42.25
CDY02978	Canola	nucleus	47.79	42.19
CDY51202	Canola	nucleus	47.35	41.63
AT2G03710.1	Thale cress	nucleus	47.35	41.47
GSMUA_Achr10P...	Banana	nucleus	21.24	40.68
GSMUA_Achr5P06590_001	Banana	nucleus	31.42	40.57
GSMUA_Achr2P13650_001	Banana	nucleus	43.81	40.24
Bra026543.1-P	Field mustard	nucleus	46.9	39.41
GSMUA_Achr9P29310_001	Banana	nucleus	28.32	39.02
GSMUA_Achr4P23540_001	Banana	nucleus	42.48	38.71
GSMUA_Achr7P00460_001	Banana	nucleus	42.48	38.4
GSMUA_Achr6P00050_001	Banana	nucleus	40.71	38.02
Bra017376.1-P	Field mustard	nucleus	40.27	37.45
GSMUA_Achr3P02280_001	Banana	nucleus	42.92	36.88
GSMUA_Achr3P30440_001	Banana	nucleus	37.17	36.52
GSMUA_Achr8P04330_001	Banana	nucleus	39.38	36.33
CDY33113	Canola	nucleus	49.12	35.92
GSMUA_Achr10P...	Banana	nucleus	36.28	35.04
GSMUA_Achr6P06040_001	Banana	nucleus	36.28	34.75
GSMUA_Achr10P...	Banana	nucleus	42.48	33.68
GSMUA_Achr7P23690_001	Banana	nucleus	35.4	33.47
GSMUA_Achr10P...	Banana	nucleus	33.63	33.19
GSMUA_Achr3P25280_001	Banana	nucleus	37.61	31.95
GSMUA_Achr3P07310_001	Banana	nucleus	32.74	30.33
GSMUA_Achr3P20280_001	Banana	nucleus	31.42	30.08
GSMUA_Achr7P12610_001	Banana	nucleus	30.97	29.79
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	36.73	29.23
GSMUA_Achr6P14760_001	Banana	nucleus	32.74	29.13
GSMUA_Achr5P24560_001	Banana	nucleus	30.09	28.81
GSMUA_Achr9P15540_001	Banana	nucleus	30.97	28.57
CDY45709	Canola	nucleus	19.47	25.43
CDY49686	Canola	nucleus	19.03	24.86
GSMUA_Achr10P...	Banana	nucleus	32.74	23.2

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr2G06250_001
EnsemblPlants:GSMUA_Achr2P06250_001	EnsemblPlants:GSMUA_Achr2T06250_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0S5L6
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF274	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002968771	SEG:seg	:	:

Description

MADS-box transcription factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06250_001]

Coordinates

chr2:+:11107882..11111568

Molecular Weight (calculated)

25767.6 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.523

Length

226 amino acids

Sequence
(BLAST)

001: MGRGRVELRR IENKINRQVT FSKRRSGLLK KAYELSILCD AEVALIVFSS RGRLFEFCSS ASLLKTIEKY RRCSYNASEA MVSSNDTQNT YQEYLKMKTR
101: VDYLQRSQRN FLGQDLDALN IKELDQLENQ IETSLRHIRS TKTQVIIDQL TDLKYKLEEV GAENSLSLSW LSGGSHSADE PPRIEDFFQP PECDPSSQTG
201: CSQVCTDLSN SETMLQDVTG LVARLM

Best Arabidopsis Sequence Match ( AT1G24260.3 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK LADGYQMPLQ LNPNQEEVDH YGRHHHQQQQ HSQAFFQPLE
201: CEPILQIGYQ GQQDGMGAGP SVNNYMLGWL PYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.