Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P29310_001 | Banana | nucleus | 61.02 | 87.8 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 71.19 | 69.14 |
| GSMUA_Achr11P... | Banana | nucleus | 50.85 | 51.06 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 39.83 | 39.17 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 38.56 | 38.24 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 38.56 | 37.6 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 38.14 | 37.5 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 34.75 | 36.28 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 36.86 | 36.25 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 36.44 | 35.83 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 36.86 | 35.66 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 34.32 | 34.47 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 33.9 | 33.06 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 30.51 | 29.27 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 31.78 | 28.52 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 29.66 | 28.23 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 28.81 | 28.1 |
| GSMUA_Achr10P... | Banana | nucleus | 33.47 | 27.72 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 28.81 | 27.2 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 26.27 | 25.31 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 24.15 | 24.78 |
| GSMUA_Achr10P... | Banana | nucleus | 22.88 | 23.08 |
| GSMUA_Achr10P... | Banana | nucleus | 22.03 | 22.71 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 22.88 | 22.59 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 16.53 | 22.29 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 25.0 | 22.18 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 21.19 | 21.19 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 21.19 | 20.49 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 19.92 | 20.0 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 19.92 | 19.92 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 21.19 | 19.68 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 22.46 | 18.66 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 19.07 | 18.37 |
| GSMUA_Achr10P... | Banana | nucleus | 8.9 | 17.8 |
| GSMUA_Achr10P... | Banana | nucleus | 22.46 | 16.61 |
Protein Annotations
| MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G06040_001 | EnsemblPlants:GSMUA_Achr6P06040_001 | EnsemblPlants:GSMUA_Achr6T06040_001 | InterPro:IPR002487 |
| UniProt:M0T4K2 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | InterPro:TF_Kbox |
| UniParc:UPI000296B8AD | SEG:seg | : | : | : | : |
Description
Agamous-like MADS-box protein AGL9 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G06040_001]
Coordinates
chr6:+:4069002..4073533
Molecular Weight (calculated)
26723.0 Da
IEP (calculated)
6.123
GRAVY (calculated)
-0.445
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSQGQIIKD LHSFAVKTSV FGAKHLYMVV TCMVFPRTLL FSDLTFTLCS IYDIMLRTLE RYQKCNYGAP ETNIISRETQ SSQQEYLKLK ARVDGLQRSQ
101: RNLLGEDLGP LNIKELEQLE RQLDASLRQI RSTRTQYMLD QLGDLQRREQ MLCEANKSLK IRLEESSDAD QQQLWDPNTH AVAYGRQQPQ PQGDGFFQSI
201: DCEPTLQIGY HPDQMAIAAA AAAAAPGPSY MPGWLA
101: RNLLGEDLGP LNIKELEQLE RQLDASLRQI RSTRTQYMLD QLGDLQRREQ MLCEANKSLK IRLEESSDAD QQQLWDPNTH AVAYGRQQPQ PQGDGFFQSI
201: DCEPTLQIGY HPDQMAIAAA AAAAAPGPSY MPGWLA
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.