Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75125 | Soybean | nucleus | 23.17 | 93.44 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 77.64 | 78.93 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 79.67 | 78.4 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 78.86 | 78.23 |
| CDY19977 | Canola | nucleus | 27.24 | 65.69 |
| Bra004361.1-P | Field mustard | nucleus | 48.78 | 63.49 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 62.6 | 62.86 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 60.16 | 61.41 |
| GSMUA_Achr10P... | Banana | nucleus | 70.33 | 60.7 |
| Solyc03g114830.2.1 | Tomato | nucleus | 59.76 | 59.51 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 55.28 | 59.13 |
| Bra025411.1-P | Field mustard | nucleus | 42.28 | 59.09 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 58.13 | 58.85 |
| KRH07467 | Soybean | nucleus | 55.69 | 58.05 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 58.13 | 57.89 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 61.79 | 57.79 |
| PGSC0003DMT400063313 | Potato | nucleus | 58.13 | 57.66 |
| KRH63171 | Soybean | nucleus | 56.91 | 57.38 |
| KRH45412 | Soybean | nucleus | 54.88 | 57.2 |
| KRH54740 | Soybean | nucleus | 56.5 | 56.97 |
| CDY34564 | Canola | nucleus | 50.0 | 56.42 |
| CDY36077 | Canola | nucleus | 50.41 | 56.11 |
| CDY16832 | Canola | nucleus | 54.88 | 56.02 |
| Bra035952.1-P | Field mustard | nucleus | 54.88 | 56.02 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 60.16 | 55.64 |
| CDY47002 | Canola | nucleus | 54.47 | 55.6 |
| Solyc06g069430.2.1 | Tomato | nucleus | 55.28 | 55.51 |
| CDY42841 | Canola | nucleus | 54.06 | 55.42 |
| Bra029347.1-P | Field mustard | nucleus | 54.06 | 55.42 |
| AT5G60910.1 | Thale cress | nucleus | 54.47 | 55.37 |
| PGSC0003DMT400010451 | Potato | nucleus | 55.69 | 54.8 |
| CDY02185 | Canola | nucleus | 53.66 | 54.77 |
| KRH03173 | Soybean | nucleus | 52.85 | 54.39 |
| Bra012997.1-P | Field mustard | nucleus | 53.25 | 54.36 |
| AT1G69120.1 | Thale cress | nucleus | 56.5 | 54.3 |
| CDY65811 | Canola | nucleus | 56.5 | 54.3 |
| Bra038326.1-P | Field mustard | nucleus | 56.5 | 54.3 |
| CDY58690 | Canola | nucleus | 52.85 | 53.94 |
| KRH70974 | Soybean | nucleus | 53.25 | 53.91 |
| CDX95960 | Canola | nucleus | 56.1 | 53.91 |
| Solyc02g089210.2.1 | Tomato | nucleus | 54.47 | 53.6 |
| CDY33554 | Canola | nucleus | 55.69 | 53.52 |
| PGSC0003DMT400003485 | Potato | nucleus | 53.66 | 53.44 |
| PGSC0003DMT400068325 | Potato | nucleus | 50.41 | 52.99 |
| KRH56774 | Soybean | nucleus | 52.03 | 52.46 |
| Solyc02g065730.1.1 | Tomato | nucleus | 49.59 | 52.14 |
| PGSC0003DMT400072888 | Potato | nucleus | 51.63 | 52.05 |
| Solyc05g056620.1.1 | Tomato | nucleus | 51.63 | 52.05 |
| AT1G26310.1 | Thale cress | nucleus | 53.25 | 51.37 |
| KRH45099 | Soybean | nucleus | 51.63 | 51.21 |
| Bra011021.1-P | Field mustard | nucleus | 52.85 | 51.18 |
| KRG93701 | Soybean | nucleus | 50.41 | 50.82 |
| KRH18331 | Soybean | nucleus | 50.0 | 50.41 |
| Bra004007.1-P | Field mustard | nucleus | 54.47 | 49.45 |
| GSMUA_Achr11P... | Banana | nucleus | 47.15 | 49.36 |
| CDY04265 | Canola | nucleus | 55.28 | 49.1 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 46.75 | 48.94 |
| CDY00082 | Canola | nucleus | 48.78 | 48.39 |
| Bra036201.1-P | Field mustard | nucleus | 48.78 | 48.39 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 47.56 | 48.15 |
| KRH01382 | Soybean | nucleus | 49.19 | 47.83 |
| CDX86353 | Canola | nucleus | 48.37 | 47.79 |
| CDY07357 | Canola | nucleus | 55.69 | 47.4 |
| CDY45899 | Canola | nucleus | 47.97 | 47.39 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 45.94 | 46.69 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 45.12 | 46.25 |
| AT3G30260.1 | Thale cress | nucleus | 46.75 | 46.18 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 45.53 | 45.9 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 44.72 | 45.45 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 43.9 | 45.0 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 43.5 | 44.58 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 43.5 | 44.58 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 40.24 | 43.81 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 41.46 | 42.86 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 29.67 | 41.71 |
| GSMUA_Achr10P... | Banana | nucleus | 18.7 | 38.98 |
| GSMUA_Achr10P... | Banana | nucleus | 36.18 | 38.03 |
| GSMUA_Achr10P... | Banana | nucleus | 34.15 | 36.68 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 35.37 | 36.4 |
| CDX85287 | Canola | nucleus | 27.24 | 35.83 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 23.58 | 35.37 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 33.33 | 33.61 |
| CDY35780 | Canola | nucleus | 26.83 | 33.5 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 31.71 | 33.05 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 33.33 | 32.28 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 30.49 | 31.78 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 36.59 | 31.69 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 30.08 | 31.49 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 30.89 | 31.02 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 29.27 | 30.51 |
| GSMUA_Achr10P... | Banana | nucleus | 34.15 | 26.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr2G13650_001 |
| EnsemblPlants:GSMUA_Achr2P13650_001 | EnsemblPlants:GSMUA_Achr2T13650_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0S7Q6 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00029557FB | SEG:seg | : | : |
Description
MADS-box transcription factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr2G13650_001]
Coordinates
chr2:+:15700992..15709421
Molecular Weight (calculated)
28276.2 Da
IEP (calculated)
9.697
GRAVY (calculated)
-0.636
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTD SSMEKILERY EYYSYAEKAL MSSDQDYQGN WCQEYGKLKA
101: KVEALSKSQR HLMGEQLEAL NLKELQQLEH QLEISLKHIR SRKNQVMFDS IAELQKKEKA LQAANKTLEQ ELMEKQKIKA ITQQAHWEQA QTSSSSPPPL
201: IAEPQPTLNI GCYQGMALAV REEASRLPVR ISNSLLPPWM LRHLNG
101: KVEALSKSQR HLMGEQLEAL NLKELQQLEH QLEISLKHIR SRKNQVMFDS IAELQKKEKA LQAANKTLEQ ELMEKQKIKA ITQQAHWEQA QTSSSSPPPL
201: IAEPQPTLNI GCYQGMALAV REEASRLPVR ISNSLLPPWM LRHLNG
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGLMQWSPN EQTY
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGLMQWSPN EQTY
Arabidopsis Description
AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.