Factsheet for Bra036201.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30260.1	Bra000214.1-P	AT2G41090.1	17360592
AT3G30260.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G30260.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G30260.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G30260.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00082	Canola	nucleus	97.98	97.98
CDY19977	Canola	nucleus	37.1	90.2
Bra025411.1-P	Field mustard	nucleus	62.1	87.5
AT3G30260.1	Thale cress	nucleus	81.85	81.53
VIT_14s0083g01030.t01	Wine grape	nucleus	53.23	53.44
Bra004361.1-P	Field mustard	nucleus	40.32	52.91
Solyc02g089210.2.1	Tomato	nucleus	50.4	50.0
PGSC0003DMT400068325	Potato	nucleus	46.37	49.15
PGSC0003DMT400003485	Potato	nucleus	48.79	48.99
GSMUA_Achr2P13650_001	Banana	nucleus	48.39	48.78
GSMUA_Achr7P00460_001	Banana	nucleus	48.39	48.0
GSMUA_Achr6P00050_001	Banana	nucleus	46.77	47.93
GSMUA_Achr4P23540_001	Banana	nucleus	47.58	47.58
Solyc02g065730.1.1	Tomato	nucleus	44.35	47.01
KRG93701	Soybean	nucleus	45.97	46.72
KRH18331	Soybean	nucleus	45.97	46.72
Bra029347.1-P	Field mustard	nucleus	44.76	46.25
EER97510	Sorghum	nucleus	47.18	46.25
Bra035952.1-P	Field mustard	nucleus	44.76	46.06
Os07t0605200-01	Rice	nucleus	45.97	45.78
GSMUA_Achr3P30440_001	Banana	nucleus	42.34	45.65
Bra012997.1-P	Field mustard	nucleus	44.35	45.64
KRH45099	Soybean	nucleus	45.56	45.56
Zm00001d022088_P004	Maize	nucleus	47.18	45.35
Bra038326.1-P	Field mustard	nucleus	46.77	45.31
Bra011021.1-P	Field mustard	nucleus	46.37	45.28
TraesCS5A01G391700.1	Wheat	nucleus	44.35	45.08
EER90862	Sorghum	nucleus	43.95	44.49
Os03t0752800-02	Rice	nucleus	43.55	43.9
TraesCS5B01G396600.2	Wheat	nucleus	44.35	43.82
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	44.76	43.7
GSMUA_Achr3P02280_001	Banana	nucleus	45.97	43.35
GSMUA_Achr8P04330_001	Banana	nucleus	42.74	43.27
TraesCS2A01G174300.3	Wheat	nucleus	45.97	42.7
KRH01382	Soybean	nucleus	43.55	42.69
TraesCS2D01G181400.3	Wheat	nucleus	45.56	42.32
TraesCS2B01G200800.1	Wheat	nucleus	45.56	42.32
Zm00001d018667_P003	Maize	nucleus	45.97	42.07
Bra004007.1-P	Field mustard	nucleus	45.56	41.7
Os07t0108900-02	Rice	nucleus	44.76	41.57
EER95753	Sorghum	nucleus	45.16	41.48
TraesCS2D01G262700.1	Wheat	nucleus	45.16	41.33
TraesCS2B01G281000.1	Wheat	nucleus	45.16	40.88
TraesCS2A01G261200.2	Wheat	nucleus	45.16	40.88
GSMUA_Achr10P...	Banana	nucleus	46.37	40.35
Zm00001d013259_P002	Maize	nucleus	43.55	38.71
Os12t0501700-00	Rice	nucleus	35.48	37.77
Bra000392.1-P	Field mustard	nucleus	39.11	37.74
Bra008674.1-P	Field mustard	nucleus	37.9	37.3
Bra030032.1-P	Field mustard	nucleus	37.9	37.3
Bra010955.1-P	Field mustard	nucleus	36.69	37.3
Bra032814.1-P	Field mustard	nucleus	37.9	37.15
GSMUA_Achr3P25280_001	Banana	nucleus	39.52	36.84
Bra006322.1-P	Field mustard	nucleus	37.1	36.8
Zm00001d007949_P001	Maize	nucleus	45.16	36.72
HORVU2Hr1G063800.7	Barley	nucleus, plastid	45.16	36.6
Bra021470.1-P	Field mustard	nucleus	37.1	36.51
Zm00001d034045_P003	Maize	nucleus	42.74	36.43
Bra039170.1-P	Field mustard	nucleus	36.69	36.4
Bra004927.1-P	Field mustard	nucleus	35.08	35.95
HORVU5Hr1G095630.3	Barley	nucleus, plastid	43.95	35.5
Bra025126.1-P	Field mustard	nucleus	35.89	34.63
KXG23502	Sorghum	nucleus	31.05	34.53
Zm00001d023736_P001	Maize	nucleus	34.68	33.46
Bra026543.1-P	Field mustard	nucleus	35.89	33.09
Bra014454.1-P	Field mustard	nucleus	30.24	32.61
Bra037895.1-P	Field mustard	nucleus	29.84	32.17
Bra000696.1-P	Field mustard	nucleus	28.63	30.74
Bra011797.1-P	Field mustard	nucleus	27.82	30.26
Bra013364.1-P	Field mustard	nucleus	30.65	30.16
Bra017638.1-P	Field mustard	nucleus	29.03	30.0
Bra030222.1-P	Field mustard	nucleus	27.42	29.96
Bra004716.1-P	Field mustard	nucleus	29.44	29.92
Bra012564.1-P	Field mustard	nucleus	30.24	29.88
Bra014552.1-P	Field mustard	nucleus	29.84	29.84
Bra039921.1-P	Field mustard	nucleus	27.02	29.52
Bra007419.1-P	Field mustard	nucleus	29.03	29.39
Bra010623.1-P	Field mustard	nucleus	25.0	28.97
Bra017376.1-P	Field mustard	nucleus	27.82	28.4
Bra003356.1-P	Field mustard	nucleus	27.42	24.91
Bra011509.1-P	Field mustard	nucleus	27.82	23.79
Bra040719.1-P	Field mustard	nucleus	14.11	20.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra036201	EnsemblPlants:Bra036201.1	EnsemblPlants:Bra036201.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4F545
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF244	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002541E45	SEG:seg	:	:

Description

AT3G30260 (E=1e-086) AGL79 | AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor

Coordinates

chrA09:+:2214640..2218010

Molecular Weight (calculated)

27971.8 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.737

Length

248 amino acids

Sequence
(BLAST)

001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLSEYSAG SSMERILERY ERCSYAGQDI TTPSLNSQGE CSTECSKLLR
101: MVDVMQRSLR HLNGEEVDAL SIRELQDLEM QLDTSLKRTR SRKNQLMVES IAQLKKKEKE LKELKKQLTK KADPREDSEP QTLNQGLASL ATPPCEPPHP
201: LPGPLSPHRP LSLGDTSQRN EDGKVDAGTL IRVTNTTLPH WMPRLTGE

Best Arabidopsis Sequence Match ( AT3G30260.1 )
(BLAST)

001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE

Arabidopsis Description

AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.