Factsheet for Bra037895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000696.1-P	Field mustard	nucleus	93.91	93.51
KRH64836	Soybean	nucleus	24.35	93.33
VIT_18s0041g01880.t01	Wine grape	nucleus	75.22	77.58
KRH56460	Soybean	nucleus	73.91	76.58
KRH64830	Soybean	nucleus	47.83	68.32
Solyc11g028020.1.1	Tomato	nucleus	62.61	64.57
GSMUA_Achr10P...	Banana	nucleus	65.65	64.53
AT4G09960.4	Thale cress	nucleus	91.3	63.83
PGSC0003DMT400013248	Potato	nucleus	63.91	63.36
PGSC0003DMT400065614	Potato	nucleus	63.04	62.5
GSMUA_Achr7P23690_001	Banana	nucleus	64.35	61.92
Bra013364.1-P	Field mustard	nucleus	61.3	55.95
Bra012564.1-P	Field mustard	nucleus	60.87	55.78
Bra004716.1-P	Field mustard	nucleus	59.13	55.74
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	66.52	53.87
Bra007419.1-P	Field mustard	nucleus	56.52	53.06
Bra014552.1-P	Field mustard	nucleus	56.09	52.02
Solyc06g064840.2.1	Tomato	nucleus	41.74	47.76
Bra003356.1-P	Field mustard	nucleus	52.61	44.32
Bra025411.1-P	Field mustard	nucleus	31.74	41.48
Bra010623.1-P	Field mustard	nucleus	33.48	35.98
Bra004361.1-P	Field mustard	nucleus	29.57	35.98
Bra030222.1-P	Field mustard	nucleus	35.22	35.68
Bra039921.1-P	Field mustard	nucleus	35.22	35.68
Bra011797.1-P	Field mustard	nucleus	34.78	35.09
Bra010955.1-P	Field mustard	nucleus	36.96	34.84
Bra004927.1-P	Field mustard	nucleus	36.09	34.3
Bra029347.1-P	Field mustard	nucleus	35.65	34.17
Bra006322.1-P	Field mustard	nucleus	36.96	34.0
Bra017638.1-P	Field mustard	nucleus	35.22	33.75
Bra030032.1-P	Field mustard	nucleus	36.96	33.73
Bra008674.1-P	Field mustard	nucleus	36.96	33.73
Bra021470.1-P	Field mustard	nucleus	36.52	33.33
Bra032814.1-P	Field mustard	nucleus	36.52	33.2
Bra039170.1-P	Field mustard	nucleus	36.09	33.2
Bra035952.1-P	Field mustard	nucleus	34.78	33.2
Bra012997.1-P	Field mustard	nucleus	34.78	33.2
Bra000392.1-P	Field mustard	nucleus	36.96	33.07
Bra014454.1-P	Field mustard	nucleus	32.17	32.17
Bra025126.1-P	Field mustard	nucleus	35.22	31.52
Bra026543.1-P	Field mustard	nucleus	36.09	30.86
Bra038326.1-P	Field mustard	nucleus	33.48	30.08
Bra011021.1-P	Field mustard	nucleus	33.04	29.92
Bra036201.1-P	Field mustard	nucleus	32.17	29.84
Bra004007.1-P	Field mustard	nucleus	33.04	28.04
Bra017376.1-P	Field mustard	nucleus	28.7	27.16
Bra011509.1-P	Field mustard	nucleus	33.91	26.9
Bra040719.1-P	Field mustard	nucleus	17.39	23.53

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra037895	EnsemblPlants:Bra037895.1	EnsemblPlants:Bra037895.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4F9Y1
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025423BD	:	:	:

Description

AT4G09960 (E=8e-112) STK, AGL11 | STK (SEEDSTICK); protein binding / transcription factor

Coordinates

chrA09:-:11389296..11391687

Molecular Weight (calculated)

26271.3 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.666

Length

230 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KASDNTSTHS VQEINAAYYQ QESAKLRQQI
101: QTIQNSNRHL MGDSLSALSV KELKQVENRL EKAISRIRSK KHELLLAEIE NLQKREIELD NESIYLRTKI AEVERFQQHH HQMVSGTEMT AIEVLASRNY
201: FAHSIMTTGS GSGAGHGCSY SDPDKKIHLG

Best Arabidopsis Sequence Match ( AT4G09960.6 )
(BLAST)

001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G

Arabidopsis Description

STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.