Factsheet for Bra008674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26462	Canola	nucleus	98.81	98.03
Bra006322.1-P	Field mustard	nucleus	94.05	94.8
CDX69499	Canola	nucleus	98.81	94.32
AT5G15800.2	Thale cress	nucleus	93.65	90.08
Bra039170.1-P	Field mustard	nucleus	85.71	86.4
Bra021470.1-P	Field mustard	nucleus	84.52	84.52
VIT_14s0083g01050.t01	Wine grape	nucleus	75.79	78.6
KRH45097	Soybean	nucleus	76.59	76.89
KRH01380	Soybean	nucleus	76.19	75.29
KRH18339	Soybean	nucleus	74.21	75.1
KRG93698	Soybean	nucleus	74.21	75.1
Solyc02g089200.2.1	Tomato	nucleus	64.29	65.85
PGSC0003DMT400003483	Potato	nucleus	64.29	65.85
GSMUA_Achr11P...	Banana	nucleus	58.73	62.98
Bra030032.1-P	Field mustard	nucleus	62.7	62.7
Bra010955.1-P	Field mustard	nucleus	59.52	61.48
Bra032814.1-P	Field mustard	nucleus	61.51	61.26
EER97012	Sorghum	nucleus	58.73	60.91
TraesCS5B01G286100.2	Wheat	nucleus	60.32	60.32
HORVU5Hr1G076400.1	Barley	nucleus	60.32	60.32
Os09t0507200-01	Rice	nucleus	59.13	60.08
TraesCS5A01G286800.1	Wheat	nucleus	59.92	59.92
TraesCS5D01G294500.1	Wheat	nucleus	59.92	59.92
Zm00001d006094_P001	Maize	nucleus	59.13	59.36
EES15309	Sorghum	nucleus	56.35	58.92
Os08t0531700-01	Rice	nucleus	57.94	58.63
TraesCS7B01G158600.1	Wheat	nucleus	57.14	58.54
TraesCS7A01G260600.1	Wheat	nucleus	57.14	58.06
TraesCS7D01G261600.1	Wheat	nucleus	57.14	58.06
Zm00001d021057_P001	Maize	nucleus	56.75	57.89
Zm00001d031620_P001	Maize	nucleus	56.75	56.08
Bra025126.1-P	Field mustard	nucleus	56.35	55.25
HORVU7Hr1G054220.3	Barley	nucleus	55.16	54.3
Bra026543.1-P	Field mustard	nucleus	57.14	53.53
Bra017376.1-P	Field mustard	nucleus	48.41	50.21
Bra004361.1-P	Field mustard	nucleus	36.51	48.68
Bra025411.1-P	Field mustard	nucleus	32.94	47.16
Bra004927.1-P	Field mustard	nucleus	42.86	44.63
Bra000392.1-P	Field mustard	nucleus	44.84	43.97
Bra014454.1-P	Field mustard	nucleus	39.68	43.48
Bra029347.1-P	Field mustard	nucleus	38.89	40.83
Bra012997.1-P	Field mustard	nucleus	38.49	40.25
Bra035952.1-P	Field mustard	nucleus	38.1	39.83
Bra011021.1-P	Field mustard	nucleus	40.08	39.76
Bra038326.1-P	Field mustard	nucleus	39.29	38.67
Bra036201.1-P	Field mustard	nucleus	37.3	37.9
Bra004716.1-P	Field mustard	nucleus	36.51	37.7
Bra000696.1-P	Field mustard	nucleus	34.52	37.66
Bra007419.1-P	Field mustard	nucleus	36.51	37.55
Bra037895.1-P	Field mustard	nucleus	33.73	36.96
Bra004007.1-P	Field mustard	nucleus	39.29	36.53
Bra013364.1-P	Field mustard	nucleus	36.11	36.11
Bra014552.1-P	Field mustard	nucleus	35.32	35.89
Bra012564.1-P	Field mustard	nucleus	35.71	35.86
Bra030222.1-P	Field mustard	nucleus	30.95	34.36
Bra011797.1-P	Field mustard	nucleus	30.95	34.21
Bra039921.1-P	Field mustard	nucleus	30.56	33.92
Bra010623.1-P	Field mustard	nucleus	28.17	33.18
Bra017638.1-P	Field mustard	nucleus	30.95	32.5
Bra003356.1-P	Field mustard	nucleus	34.92	32.23
Bra011509.1-P	Field mustard	nucleus	29.76	25.86
Bra040719.1-P	Field mustard	nucleus	17.06	25.29

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra008674	EnsemblPlants:Bra008674.1	EnsemblPlants:Bra008674.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CWS7
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF353	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544C40	SEG:seg	:	:

Description

AT5G15800 (E=1e-125) SEP1, AGL2 | SEP1 (SEPALLATA1); DNA binding / transcription factor

Coordinates

chrA10:+:13337171..13339256

Molecular Weight (calculated)

28777.4 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.748

Length

252 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMIKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYESLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQSKEQM LLETNRALTI KLDDMIGVRS HHMGGGGGWE GNEQNVPYEH
201: HHQAQPQGLF QPLECNPTLQ IGYDNPVGSE QITATTQAQA QPGNGYIPGW ML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.