Factsheet for Bra017376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004928.1-P
Bra009436.1-P
Bra009911.1-P
Bra012997.1-P
Bra015643.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra020600.1-P
Bra029347.1-P
Bra035952.1-P
Bra038326.1-P
Bra039324.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Bra009911.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31630.1	15805477
AT2G03710.1	Bra009911.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020524.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020525.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020550.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra020552.1-P	AT1G31640.1	15805477
AT2G03710.1	Bra009436.1-P	AT1G46408.1	15805477
AT2G03710.1	Bra020600.1-P	AT1G48150.1	15805477
AT2G03710.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G03710.1	Bra015643.1-P	AT1G77980.1	15805477
AT2G03710.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G03710.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G03710.1	Bra012997.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra029347.1-P	AT5G60910.1	15805477
AT2G03710.1	Bra035952.1-P	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04164	Canola	nucleus	97.53	91.86
Bra025126.1-P	Field mustard	nucleus	84.77	80.16
AT2G03710.1	Thale cress	nucleus	83.54	78.68
Bra026543.1-P	Field mustard	nucleus	85.19	76.95
CDY33113	Canola	nucleus	92.18	72.49
VIT_01s0011g00110.t01	Wine grape	nucleus	52.26	52.26
TraesCS7B01G020900.1	Wheat	nucleus	14.4	50.72
TraesCS7B01G021100.1	Wheat	nucleus	13.58	50.0
Solyc04g005320.2.1	Tomato	nucleus	48.56	49.58
Bra008674.1-P	Field mustard	nucleus	50.21	48.41
Bra006322.1-P	Field mustard	nucleus	49.79	48.4
KRH70973	Soybean	nucleus	48.56	48.36
PGSC0003DMT400072891	Potato	nucleus	47.74	47.93
KRH75123	Soybean	nucleus	48.15	47.56
Solyc05g012020.2.1	Tomato	nucleus	47.33	47.52
GSMUA_Achr8P28100_001	Banana	nucleus	44.86	45.42
Bra039170.1-P	Field mustard	nucleus	46.09	44.8
Bra021470.1-P	Field mustard	nucleus	45.68	44.05
GSMUA_Achr7P26700_001	Banana	nucleus	41.56	42.44
Bra010955.1-P	Field mustard	nucleus	41.98	41.8
TraesCS4B01G245700.1	Wheat	nucleus	37.04	41.67
GSMUA_Achr3P15930_001	Banana	nucleus	41.15	41.67
Bra030032.1-P	Field mustard	nucleus	43.21	41.67
Zm00001d045231_P002	Maize	nucleus	37.45	40.44
Bra032814.1-P	Field mustard	nucleus	41.98	40.32
GSMUA_Achr2P06250_001	Banana	nucleus	37.45	40.27
TraesCS4D01G243700.1	Wheat	nucleus	37.04	40.0
TraesCS7D01G120500.1	Wheat	nucleus	37.04	39.65
TraesCS7B01G020800.1	Wheat	nucleus	37.04	39.65
GSMUA_Achr4P14460_001	Banana	nucleus	39.09	39.58
EER89250	Sorghum	nucleus	36.63	39.56
OQU93000	Sorghum	nucleus	39.51	39.51
Os06t0162800-01	Rice	nucleus	36.21	39.11
TraesCS7A01G122100.1	Wheat	nucleus	36.21	38.77
Os03t0215400-01	Rice	nucleus	40.74	38.52
TraesCS4D01G245200.1	Wheat	nucleus	38.68	37.9
TraesCS7A01G122000.1	Wheat	nucleus	35.39	37.89
TraesCS7D01G120600.1	Wheat	nucleus	35.39	37.89
Zm00001d048082_P001	Maize	nucleus	38.68	37.3
TraesCS4A01G028200.1	Wheat	nucleus	35.39	37.07
Zm00001d028217_P001	Maize	nucleus	39.09	36.82
TraesCS4D01G276100.1	Wheat	nucleus	36.21	36.51
TraesCS4B01G245800.1	Wheat	nucleus	37.04	36.44
TraesCS4A01G028100.1	Wheat	nucleus	35.39	35.54
Bra004361.1-P	Field mustard	nucleus	26.75	34.39
Bra004927.1-P	Field mustard	nucleus	34.16	34.3
Bra025411.1-P	Field mustard	nucleus	24.69	34.09
TraesCS4B01G277800.1	Wheat	nucleus	34.57	34.01
TraesCS4A01G058900.1	Wheat	nucleus	22.63	32.35
HORVU7Hr1G025700.6	Barley	nucleus	36.63	32.25
Bra000392.1-P	Field mustard	nucleus	33.74	31.91
TraesCS7B01G021000.1	Wheat	nucleus	24.28	31.55
TraesCS4A01G078700.1	Wheat	nucleus	28.4	31.51
Bra014454.1-P	Field mustard	nucleus	29.63	31.3
HORVU4Hr1G067680.14	Barley	nucleus	34.57	29.58
Bra013364.1-P	Field mustard	nucleus	30.45	29.37
Bra012564.1-P	Field mustard	nucleus	30.04	29.08
Bra037895.1-P	Field mustard	nucleus	27.16	28.7
Bra000696.1-P	Field mustard	nucleus	27.16	28.57
Bra010623.1-P	Field mustard	nucleus	25.1	28.5
Bra012997.1-P	Field mustard	nucleus	27.98	28.22
Bra035952.1-P	Field mustard	nucleus	27.98	28.22
Bra007419.1-P	Field mustard	nucleus	28.4	28.16
Bra038326.1-P	Field mustard	nucleus	29.63	28.12
Bra029347.1-P	Field mustard	nucleus	27.57	27.92
Bra004716.1-P	Field mustard	nucleus	27.98	27.87
Bra036201.1-P	Field mustard	nucleus	28.4	27.82
Bra030222.1-P	Field mustard	nucleus	25.93	27.75
Bra011021.1-P	Field mustard	nucleus	28.81	27.56
Bra039921.1-P	Field mustard	nucleus	25.51	27.31
Bra011797.1-P	Field mustard	nucleus	25.51	27.19
Bra014552.1-P	Field mustard	nucleus	27.57	27.02
Bra004007.1-P	Field mustard	nucleus	29.22	26.2
Bra017638.1-P	Field mustard	nucleus	24.69	25.0
Bra003356.1-P	Field mustard	nucleus	27.57	24.54
Bra040719.1-P	Field mustard	nucleus	15.64	22.35
Bra011509.1-P	Field mustard	nucleus	23.05	19.31

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra017376	EnsemblPlants:Bra017376.1	EnsemblPlants:Bra017376.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DLJ5	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF352	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002542240	SEG:seg

Description

AT2G03710 (E=3e-106) SEP4, AGL3 | SEP4 (SEPALLATA 4); DNA binding / transcription factor

Coordinates

chrA09:-:14770650..14772787

Molecular Weight (calculated)

27757.9 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.673

Length

243 amino acids

Sequence
(BLAST)

001: MYAVSTIKRR NGLLKKAYEL SVLCDAEIAL LIFSNRGKLY EFCSSPSGMA KTIEKYRKHS YETMDPNQSA KDLQEKYQDY LKLKSRVEIL QHSQRHLLGE
101: EIAGMGVNEL EQLERQVDAS LRQIRSTKAR FMLDQLSDLK TKEEMLLETN RDLKRKLEEN DATVTQSLWG ASSFAEHSQQ QQQQQGMSSY QTNLPTQEVG
201: FFKPLQGNVA WQMSHYNPGV TNASDSATTS QNVINGFFPG WTV

Best Arabidopsis Sequence Match ( AT2G03710.2 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.