Factsheet for Solyc04g005320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc03g114830.2.1
Solyc05g051830.2.1
Solyc05g056620.1.1
Solyc06g053930.2.1
Solyc06g069430.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT2G03710.1	Solyc05g051830.2.1	AT1G77980.1	15805477
AT2G03710.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT2G03710.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G03710.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G03710.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT2G03710.1	Solyc06g069430.2.1	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012020.2.1	Tomato	nucleus	72.27	71.07
Solyc03g114840.2.1	Tomato	nucleus	65.13	63.01
VIT_01s0011g00110.t01	Wine grape	nucleus	64.29	62.96
KRH70973	Soybean	nucleus	62.6	61.07
Solyc12g038510.1.1	Tomato	nucleus	63.03	60.0
KRH75123	Soybean	nucleus	61.34	59.35
Solyc02g089200.2.1	Tomato	nucleus	60.5	58.54
Solyc05g015750.2.1	Tomato	nucleus	59.24	58.51
CDY04164	Canola	nucleus	58.4	53.88
CDY51202	Canola	nucleus	57.98	53.7
Bra025126.1-P	Field mustard	nucleus	57.98	53.7
CDY02978	Canola	nucleus	57.14	53.12
AT2G03710.1	Thale cress	nucleus	57.56	53.1
Bra026543.1-P	Field mustard	nucleus	56.72	50.19
Bra017376.1-P	Field mustard	nucleus	49.58	48.56
Solyc01g093960.2.1	Tomato	nucleus	48.74	46.03
CDY33113	Canola	nucleus	57.14	44.01
Solyc06g069430.2.1	Tomato	nucleus	44.54	43.27
Solyc03g114830.2.1	Tomato	nucleus	44.12	42.51
Solyc05g056620.1.1	Tomato	nucleus	43.28	42.21
Solyc02g065730.1.1	Tomato	nucleus	41.18	41.88
Solyc02g089210.2.1	Tomato	nucleus	43.28	41.2
Solyc11g028020.1.1	Tomato	nucleus	38.24	40.81
Solyc03g019710.2.1	Tomato	nucleus	30.25	40.68
CDY45709	Canola	nucleus	27.73	38.15
CDY49686	Canola	nucleus	27.31	37.57
Solyc02g071730.2.1	Tomato	nucleus	36.55	35.08
Solyc02g091550.1.1	Tomato	nucleus	34.03	34.47
Solyc07g055920.2.1	Tomato	nucleus	35.71	31.84
Solyc01g106170.2.1	Tomato	mitochondrion	19.75	31.76
Solyc06g064840.2.1	Tomato	nucleus	21.85	25.87
Solyc04g076700.2.1	Tomato	nucleus	13.03	23.48
Solyc12g088090.1.1	Tomato	nucleus	18.07	19.37

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:K4BND8	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF352
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc04g005320.2	EnsemblPlants:Solyc04g005320.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00027661C7	SEG:seg	:	:	:

Description

MADS-box protein 04g005320 [Source:UniProtKB/Swiss-Prot;Acc:K4BND8]

Coordinates

chr4:-:228307..233354

Molecular Weight (calculated)

27523.7 Da

IEP (calculated)

8.600

GRAVY (calculated)

-0.747

Length

238 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCE AEVALIIFSN RGKLYEFCST SSMSDTLERY HRCSYGDLET GQSSKDSQNN YQEYMKLKAR
101: VEVLQQSQRH ILGEDLGQLN TKDLEQLERQ LDSSLRLIRS RRTQNMLDQL SDLQQKEQSL LEINRSLKTK LEENSVAHWH ITGEQNVQFR QQPAQSEGFF
201: QPLQCNTNIV PNRYNVAPLD SIEPSTQNAT GILPGWML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.