Factsheet for Solyc03g114840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063315	Potato	nucleus	97.15	97.15
TraesCS7B01G021100.1	Wheat	nucleus	21.14	78.79
TraesCS7B01G020900.1	Wheat	nucleus	21.54	76.81
Solyc12g038510.1.1	Tomato	nucleus	70.73	69.6
VIT_17s0000g05000.t01	Wine grape	nucleus	65.85	65.85
Solyc04g005320.2.1	Tomato	nucleus	63.01	65.13
Solyc05g012020.2.1	Tomato	nucleus	60.98	61.98
Solyc02g089200.2.1	Tomato	nucleus	60.16	60.16
GSMUA_Achr8P28100_001	Banana	nucleus	58.13	59.58
Zm00001d045231_P002	Maize	nucleus	54.47	59.56
GSMUA_Achr2P06250_001	Banana	nucleus	54.47	59.29
Solyc05g015750.2.1	Tomato	nucleus	57.72	58.92
EER89250	Sorghum	nucleus	52.85	57.78
TraesCS4B01G245700.1	Wheat	nucleus	49.19	56.02
Os06t0162800-01	Rice	nucleus	50.81	55.56
TraesCS7B01G020800.1	Wheat	nucleus	51.22	55.51
TraesCS7D01G120500.1	Wheat	nucleus	51.22	55.51
GSMUA_Achr3P15930_001	Banana	nucleus	54.06	55.42
TraesCS7A01G122000.1	Wheat	nucleus	50.81	55.07
GSMUA_Achr7P26700_001	Banana	nucleus	53.25	55.04
TraesCS7A01G122100.1	Wheat	nucleus	50.41	54.63
GSMUA_Achr4P14460_001	Banana	nucleus	53.25	54.58
TraesCS4D01G243700.1	Wheat	nucleus	49.59	54.22
OQU93000	Sorghum	nucleus	52.85	53.5
Os03t0215400-01	Rice	nucleus	54.88	52.53
TraesCS4B01G245800.1	Wheat	nucleus	51.22	51.01
TraesCS4D01G245200.1	Wheat	nucleus	51.22	50.81
Zm00001d028217_P001	Maize	nucleus	52.85	50.39
TraesCS7D01G120600.1	Wheat	nucleus	45.94	49.78
Zm00001d048082_P001	Maize	nucleus	50.81	49.6
TraesCS4A01G028200.1	Wheat	nucleus	45.53	48.28
TraesCS4A01G058900.1	Wheat	nucleus	33.33	48.24
TraesCS4D01G276100.1	Wheat	nucleus	47.15	48.13
TraesCS4A01G028100.1	Wheat	nucleus	46.34	47.11
Solyc01g093960.2.1	Tomato	nucleus	47.97	46.83
TraesCS4B01G277800.1	Wheat	nucleus	45.94	45.75
HORVU7Hr1G025700.6	Barley	nucleus	51.22	45.65
Solyc03g114830.2.1	Tomato	nucleus	44.72	44.53
Solyc06g069430.2.1	Tomato	nucleus	44.31	44.49
Solyc02g089210.2.1	Tomato	nucleus	43.9	43.2
Solyc02g065730.1.1	Tomato	nucleus	39.84	41.88
Solyc05g056620.1.1	Tomato	nucleus	41.06	41.39
TraesCS4A01G078700.1	Wheat	nucleus	36.59	41.1
Solyc03g019710.2.1	Tomato	nucleus	29.27	40.68
Solyc11g028020.1.1	Tomato	nucleus	34.96	38.56
HORVU4Hr1G067680.14	Barley	nucleus	44.31	38.38
TraesCS7B01G021000.1	Wheat	nucleus	28.05	36.9
Solyc02g091550.1.1	Tomato	nucleus	33.74	35.32
Solyc02g071730.2.1	Tomato	nucleus	34.55	34.27
Solyc07g055920.2.1	Tomato	nucleus	34.96	32.21
Solyc01g106170.2.1	Tomato	mitochondrion	19.11	31.76
Solyc06g064840.2.1	Tomato	nucleus	20.33	24.88
Solyc04g076700.2.1	Tomato	nucleus	13.01	24.24
Solyc12g088090.1.1	Tomato	nucleus	17.48	19.37

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AY294329	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF274
UniProt:Q7Y040	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc03g114840.2	EnsemblPlants:Solyc03g114840.2.1	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00001A97FE	SEG:seg	:	:

Description

EJ2MADS-box protein EJ2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y040]

Coordinates

chr3:-:64714623..64720929

Molecular Weight (calculated)

28399.9 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.641

Length

246 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST SSMVKTIEKY QRCSYATLEA NQSVTDTQNN YHEYLRLKAR
101: VELLQRSQRN FLGEDLGTLS SKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQKEQML AESNRLLRRK LEESVAGFPL RLCWEDGGDH QLMHQQNRLP
201: NTEGFFQPLG LHSSSPHFGY NPVNTDEVNA AATAHNMNGF IHGWML

Best Arabidopsis Sequence Match ( AT2G03710.1 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.