Factsheet for Os06t0162800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0922800-01
Os03t0122600-01
Os03t0582400-01
Os03t0743500-02
Os03t0752800-02
Os06t0108500-01
Os06t0223300-01
Os07t0108900-02
Os07t0605200-01
Os08t0494100-02
Os08t0531900-01
Os10t0536100-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Os03t0582400-01	AT1G31630.1	15805477
AT2G03710.1	Os03t0582400-01	AT1G31640.1	15805477
AT2G03710.1	Os03t0752800-02	AT1G69120.1	15805477
AT2G03710.1	Os07t0108900-02	AT1G69120.1	15805477
AT2G03710.1	Os07t0605200-01	AT1G69120.1	15805477
AT2G03710.1	Os12t0501700-00	AT1G69120.1	15805477
AT2G03710.1	Os06t0223300-01	AT1G77980.1	15805477
AT2G03710.1	Os08t0494100-02	AT1G77980.1	15805477
AT2G03710.1	Os01t0922800-01	AT2G45660.1	15805477
AT2G03710.1	Os03t0122600-01	AT2G45660.1	15805477
AT2G03710.1	Os06t0108500-01	AT2G45660.1	15805477
AT2G03710.1	Os08t0531900-01	AT2G45660.1	15805477
AT2G03710.1	Os10t0536100-01	AT2G45660.1	15805477
AT2G03710.1	Os03t0743500-02	AT4G14640.1	17360592
AT2G03710.1	Os03t0752800-02	AT5G60910.1	15805477
AT2G03710.1	Os07t0108900-02	AT5G60910.1	15805477
AT2G03710.1	Os07t0605200-01	AT5G60910.1	15805477
AT2G03710.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G021100.1	Wheat	nucleus	26.67	90.91
TraesCS7B01G020900.1	Wheat	nucleus	27.11	88.41
EER89250	Sorghum	nucleus	85.33	85.33
Zm00001d045231_P002	Maize	nucleus	84.0	84.0
TraesCS7A01G122000.1	Wheat	nucleus	83.11	82.38
TraesCS7D01G120500.1	Wheat	nucleus	82.22	81.5
TraesCS7B01G020800.1	Wheat	nucleus	82.22	81.5
TraesCS7A01G122100.1	Wheat	nucleus	80.0	79.3
Os03t0215400-01	Rice	nucleus	76.89	67.32
HORVU7Hr1G025700.6	Barley	nucleus	80.0	65.22
TraesCS7D01G120600.1	Wheat	nucleus	65.78	65.2
GSMUA_Achr7P26700_001	Banana	nucleus	56.0	52.94
VIT_17s0000g05000.t01	Wine grape	nucleus	56.0	51.22
GSMUA_Achr4P14460_001	Banana	nucleus	54.22	50.83
Solyc03g114840.2.1	Tomato	nucleus	55.56	50.81
PGSC0003DMT400063315	Potato	nucleus	55.11	50.41
KRH70973	Soybean	nucleus	54.22	50.0
Os03t0753100-01	Rice	nucleus	52.89	49.79
Os09t0507200-01	Rice	nucleus	54.67	49.6
KRH75123	Soybean	nucleus	53.33	48.78
Os08t0531700-01	Rice	nucleus	53.78	48.59
Os04t0580700-01	Rice	nucleus	52.44	46.46
Os02t0682200-01	Rice	nucleus	51.56	46.4
Os08t0431900-00	Rice	nucleus	32.44	45.91
Os03t0752800-02	Rice	nucleus	48.0	43.9
Os06t0347700-00	Rice	nucleus	28.44	43.54
Bra025126.1-P	Field mustard	nucleus	48.44	42.41
CDY02978	Canola	nucleus	48.0	42.19
CDY51202	Canola	nucleus	48.0	42.02
CDY04164	Canola	nucleus	48.0	41.86
AT2G03710.1	Thale cress	nucleus	47.56	41.47
Bra026543.1-P	Field mustard	nucleus	48.0	40.15
Os07t0605200-01	Rice	nucleus	43.11	38.96
Os07t0108900-02	Rice	nucleus	44.89	37.83
Bra017376.1-P	Field mustard	nucleus	39.11	36.21
Os02t0579600-00	Rice	nucleus	37.33	35.0
CDY33113	Canola	nucleus	48.0	34.95
Os12t0501700-00	Rice	nucleus	35.11	33.91
Os02t0731200-01	Rice	nucleus	36.0	33.61
Os04t0304400-01	Rice	nucleus	33.78	33.48
Os12t0207000-01	Rice	nucleus	39.11	32.59
Os05t0203800-02	Rice	nucleus	39.11	32.35
Os01t0201700-02	Rice	nucleus	39.11	31.88
Os01t0886200-01	Rice	nucleus	37.33	31.7
CDY49686	Canola	nucleus	19.56	25.43
CDY45709	Canola	nucleus	19.56	25.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4340218	EMBL:AK064184	ProteinID:BAA81865.1	ProteinID:BAF18805.1
ProteinID:BAS96303.1	ncoils:Coil	ProteinID:EAZ35922.1	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0030154	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os06g0162800	EnsemblPlants:Os06t0162800-01	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF206
UniProt:Q0DEB8	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
EMBL:U78890	UniParc:UPI00000A99B3	RefSeq:XP_015641896.1	:	:	:

Description

MADS BOX GENE 5MADS box protein. (Os06t0162800-01)

Coordinates

chr6:-:3162860..3169331

Molecular Weight (calculated)

25995.1 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.586

Length

225 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS SCMYKTLERY RSCNYNLNSC EASAALETEL SNYQEYLKLK
101: TRVEFLQTTQ RNLLGEDLVP LSLKELEQLE NQIEISLMNI RSSKNQQLLD QVFELKRKEQ QLQDANKDLK RKIQETSGEN MLHISCQDVG PSGHASEANQ
201: EFLHHAICDP SLHIGYQAYM DHLNQ

Best Arabidopsis Sequence Match ( AT1G24260.2 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.