Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G322700.2 | Wheat | nucleus | 82.99 | 82.99 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 82.57 | 82.57 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 81.74 | 81.74 |
| HORVU6Hr1G073040.2 | Barley | nucleus | 80.5 | 80.5 |
| OQU85464 | Sorghum | nucleus | 78.84 | 78.51 |
| Zm00001d017932_P002 | Maize | nucleus | 74.69 | 76.27 |
| Os08t0431900-00 | Rice | nucleus | 43.98 | 66.67 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 66.39 | 65.57 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 61.41 | 62.98 |
| Os02t0579600-00 | Rice | nucleus | 62.24 | 62.5 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 58.51 | 59.75 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 60.17 | 59.18 |
| Os06t0347700-00 | Rice | nucleus | 35.27 | 57.82 |
| CDX72465 | Canola | nucleus | 56.43 | 56.67 |
| CDY49287 | Canola | nucleus | 56.02 | 56.25 |
| CDX75412 | Canola | nucleus | 56.02 | 56.25 |
| CDX69036 | Canola | nucleus | 56.02 | 56.25 |
| Bra017638.1-P | Field mustard | nucleus | 56.02 | 56.25 |
| AT3G57230.1 | Thale cress | nucleus | 55.19 | 55.42 |
| KRH42047 | Soybean | nucleus | 51.04 | 51.04 |
| Os04t0304400-01 | Rice | nucleus | 46.89 | 49.78 |
| Bra011509.1-P | Field mustard | nucleus | 52.28 | 43.45 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 26.14 | 42.57 |
| Os06t0162800-01 | Rice | nucleus | 33.61 | 36.0 |
| Os07t0605200-01 | Rice | nucleus | 35.27 | 34.14 |
| Os03t0753100-01 | Rice | nucleus | 33.2 | 33.47 |
| Os01t0886200-01 | Rice | nucleus | 36.1 | 32.83 |
| Os12t0207000-01 | Rice | nucleus | 36.51 | 32.59 |
| Os02t0682200-01 | Rice | nucleus | 33.61 | 32.4 |
| Os03t0752800-02 | Rice | nucleus | 32.37 | 31.71 |
| Os05t0203800-02 | Rice | nucleus | 35.68 | 31.62 |
| Os12t0501700-00 | Rice | nucleus | 30.29 | 31.33 |
| Os07t0108900-02 | Rice | nucleus | 34.44 | 31.09 |
| Os03t0215400-01 | Rice | nucleus | 32.78 | 30.74 |
| Os01t0201700-02 | Rice | nucleus | 34.44 | 30.07 |
| Os09t0507200-01 | Rice | nucleus | 30.71 | 29.84 |
| Os08t0531700-01 | Rice | nucleus | 30.71 | 29.72 |
| Os04t0580700-01 | Rice | nucleus | 31.12 | 29.53 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4330621 | EMBL:AK241644 | EMBL:AY177702 | EMBL:AY224482 |
| ProteinID:BAD15933.1 | ProteinID:BAF09932.1 | ProteinID:BAS80753.1 | ncoils:Coil | ProteinID:EEE57746.1 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0040007 |
| GO:GO:0040008 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os02g0731200 | EnsemblPlants:Os02t0731200-01 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | UniProt:Q6Z6W2 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000191F89 |
| RefSeq:XP_015626795.1 | : | : | : | : | : |
Description
MADS BOX GENE 57Transcription factor MADS57. (Os02t0731200-01)
Coordinates
chr2:+:30456666..30462759
Molecular Weight (calculated)
27237.6 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.611
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST NMKTVIDRYT NAKEELLGGN ATSEIKIWQR EAASLRQQLH
101: NLQESHKQLM GEELSGLGVR DLQGLENRLE ISLRNIRMRK DNLLKSEIEE LHVKGSLIHQ ENIELSRSLN VMSQQKLELY NKLQACEQRG ATDANESSST
201: PYSFRIIQNA NMPPSLELSQ SQQREGECSK TAAPELGLHL P
101: NLQESHKQLM GEELSGLGVR DLQGLENRLE ISLRNIRMRK DNLLKSEIEE LHVKGSLIHQ ENIELSRSLN VMSQQKLELY NKLQACEQRG ATDANESSST
201: PYSFRIIQNA NMPPSLELSQ SQQREGECSK TAAPELGLHL P
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.