Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75125 | Soybean | nucleus | 19.31 | 73.77 |
| KXG23502 | Sorghum | nucleus | 48.93 | 51.12 |
| CDY19977 | Canola | nucleus | 21.46 | 49.02 |
| Zm00001d023736_P001 | Maize | nucleus | 52.36 | 47.47 |
| Bra025411.1-P | Field mustard | nucleus | 34.33 | 45.45 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 42.49 | 40.74 |
| Bra004361.1-P | Field mustard | nucleus | 32.62 | 40.21 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 42.49 | 40.08 |
| PGSC0003DMT400003485 | Potato | nucleus | 42.06 | 39.68 |
| CDY42841 | Canola | nucleus | 40.77 | 39.58 |
| Bra029347.1-P | Field mustard | nucleus | 40.77 | 39.58 |
| CDY47002 | Canola | nucleus | 40.77 | 39.42 |
| AT5G60910.1 | Thale cress | nucleus | 40.77 | 39.26 |
| Solyc02g089210.2.1 | Tomato | nucleus | 42.06 | 39.2 |
| CDY58690 | Canola | nucleus | 40.34 | 39.0 |
| Bra035952.1-P | Field mustard | nucleus | 40.34 | 39.0 |
| CDY16832 | Canola | nucleus | 40.34 | 39.0 |
| Os06t0347700-00 | Rice | nucleus | 24.46 | 38.78 |
| Os03t0752800-02 | Rice | nucleus | 40.77 | 38.62 |
| Bra012997.1-P | Field mustard | nucleus | 39.91 | 38.59 |
| KRG93701 | Soybean | nucleus | 40.34 | 38.52 |
| KRH03173 | Soybean | nucleus | 39.48 | 38.49 |
| CDY02185 | Canola | nucleus | 39.48 | 38.17 |
| Os07t0605200-01 | Rice | nucleus | 40.77 | 38.15 |
| KRH54740 | Soybean | nucleus | 39.91 | 38.11 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 39.06 | 37.76 |
| Os08t0431900-00 | Rice | nucleus | 25.75 | 37.74 |
| KRH63171 | Soybean | nucleus | 39.48 | 37.7 |
| Solyc03g114830.2.1 | Tomato | nucleus | 39.91 | 37.65 |
| CDY34564 | Canola | nucleus | 35.19 | 37.61 |
| KRH18331 | Soybean | nucleus | 39.06 | 37.3 |
| GSMUA_Achr10P... | Banana | nucleus | 45.49 | 37.19 |
| CDY36077 | Canola | nucleus | 35.19 | 37.1 |
| PGSC0003DMT400063313 | Potato | nucleus | 39.48 | 37.1 |
| KRH45412 | Soybean | nucleus | 37.34 | 36.86 |
| PGSC0003DMT400068325 | Potato | nucleus | 36.91 | 36.75 |
| Solyc06g069430.2.1 | Tomato | nucleus | 38.63 | 36.73 |
| AT3G30260.1 | Thale cress | nucleus | 39.06 | 36.55 |
| CDY45899 | Canola | nucleus | 39.06 | 36.55 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 41.2 | 36.5 |
| KRH56774 | Soybean | nucleus | 38.2 | 36.48 |
| KRH07467 | Soybean | nucleus | 36.91 | 36.44 |
| KRH45099 | Soybean | nucleus | 38.2 | 35.89 |
| CDY00082 | Canola | nucleus | 38.2 | 35.89 |
| CDX86353 | Canola | nucleus | 38.2 | 35.74 |
| PGSC0003DMT400010451 | Potato | nucleus | 38.2 | 35.6 |
| Bra036201.1-P | Field mustard | nucleus | 37.77 | 35.48 |
| Solyc05g056620.1.1 | Tomato | nucleus | 36.91 | 35.25 |
| Os07t0108900-02 | Rice | nucleus | 40.34 | 35.21 |
| Os06t0162800-01 | Rice | nucleus | 33.91 | 35.11 |
| PGSC0003DMT400072888 | Potato | nucleus | 36.48 | 34.84 |
| KRH01382 | Soybean | nucleus | 37.77 | 34.78 |
| Solyc02g065730.1.1 | Tomato | nucleus | 34.76 | 34.62 |
| KRH70974 | Soybean | nucleus | 36.05 | 34.57 |
| AT1G26310.1 | Thale cress | nucleus | 36.91 | 33.73 |
| CDX95960 | Canola | nucleus | 36.91 | 33.59 |
| Bra011021.1-P | Field mustard | nucleus | 36.48 | 33.46 |
| CDY65811 | Canola | nucleus | 36.48 | 33.2 |
| Bra038326.1-P | Field mustard | nucleus | 36.48 | 33.2 |
| CDY33554 | Canola | nucleus | 36.05 | 32.81 |
| AT1G69120.1 | Thale cress | nucleus | 35.62 | 32.42 |
| Os09t0507200-01 | Rice | nucleus | 33.48 | 31.45 |
| Bra004007.1-P | Field mustard | nucleus | 36.05 | 31.0 |
| Os08t0531700-01 | Rice | nucleus | 33.05 | 30.92 |
| Os03t0753100-01 | Rice | nucleus | 31.33 | 30.54 |
| Os02t0682200-01 | Rice | nucleus | 32.62 | 30.4 |
| Os03t0215400-01 | Rice | nucleus | 33.48 | 30.35 |
| CDY04265 | Canola | nucleus | 36.05 | 30.32 |
| Os02t0731200-01 | Rice | nucleus | 31.33 | 30.29 |
| Os04t0304400-01 | Rice | nucleus | 29.18 | 29.96 |
| Os04t0580700-01 | Rice | nucleus | 32.62 | 29.92 |
| CDY07357 | Canola | nucleus | 36.48 | 29.41 |
| Os02t0579600-00 | Rice | nucleus | 29.61 | 28.75 |
| CDX85287 | Canola | nucleus | 21.46 | 26.74 |
| Os12t0207000-01 | Rice | nucleus | 28.76 | 24.81 |
| CDY35780 | Canola | nucleus | 20.6 | 24.37 |
| Os01t0201700-02 | Rice | nucleus | 28.76 | 24.28 |
| Os05t0203800-02 | Rice | nucleus | 27.9 | 23.9 |
| Os01t0886200-01 | Rice | nucleus | 27.04 | 23.77 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4352275 | ProteinID:ABA98632.2 | EMBL:AY250075 | ProteinID:BAF29842.1 |
| ProteinID:BAT17255.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os12g0501700 | EnsemblPlants:Os12t0501700-00 | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | UniProt:Q2QQA3 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00006E22BC |
| RefSeq:XP_015619865.1 | SEG:seg | : | : | : | : |
Description
MADS BOX GENE 20Transcription factor, MADS-box domain containing protein. (Os12t0501700-00)
Coordinates
chr12:-:19106070..19115282
Molecular Weight (calculated)
26121.2 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.500
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS HTTMERILEK YDRHELLSEG NNVIEEFPEL EGSMSYDHIK
101: LRGRIEALKK SQRNLMGQEL DSLTLQDIQQ LENQIDTSLN NIRSRKEKLL MEKNTILEKK ITELETLHTC IRASPTKAAA PPACNTADAF VPNLNICCGD
201: SGEPETVTAP LGWTSSNNGL PWWMLQSSSN GKS
101: LRGRIEALKK SQRNLMGQEL DSLTLQDIQQ LENQIDTSLN NIRSRKEKLL MEKNTILEKK ITELETLHTC IRASPTKAAA PPACNTADAF VPNLNICCGD
201: SGEPETVTAP LGWTSSNNGL PWWMLQSSSN GKS
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
Arabidopsis Description
AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.