Factsheet for Bra025411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30260.1	Bra000214.1-P	AT2G41090.1	17360592
AT3G30260.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G30260.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G30260.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G30260.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86353	Canola	nucleus	97.73	69.08
Bra036201.1-P	Field mustard	nucleus	87.5	62.1
AT3G30260.1	Thale cress	nucleus	85.8	60.64
CDX85287	Canola	nucleus	60.8	57.22
Bra004361.1-P	Field mustard	nucleus	58.52	54.5
PGSC0003DMT400068325	Potato	nucleus	61.93	46.58
VIT_14s0083g01030.t01	Wine grape	nucleus	65.34	46.56
Solyc02g089210.2.1	Tomato	nucleus	64.77	45.6
PGSC0003DMT400003485	Potato	nucleus	63.07	44.94
Solyc02g065730.1.1	Tomato	nucleus	58.52	44.02
GSMUA_Achr6P00050_001	Banana	nucleus	59.66	43.39
KRH18331	Soybean	nucleus	59.09	42.62
KRG93701	Soybean	nucleus	59.09	42.62
GSMUA_Achr4P23540_001	Banana	nucleus	59.66	42.34
GSMUA_Achr2P13650_001	Banana	nucleus	59.09	42.28
Os07t0605200-01	Rice	nucleus	59.66	42.17
EER97510	Sorghum	nucleus	60.23	41.9
Zm00001d022088_P004	Maize	nucleus	60.23	41.09
Bra038326.1-P	Field mustard	nucleus	59.66	41.02
GSMUA_Achr7P00460_001	Banana	nucleus	57.95	40.8
Bra035952.1-P	Field mustard	nucleus	55.68	40.66
Os03t0752800-02	Rice	nucleus	56.82	40.65
Bra011021.1-P	Field mustard	nucleus	58.52	40.55
GSMUA_Achr3P30440_001	Banana	nucleus	52.84	40.43
Bra029347.1-P	Field mustard	nucleus	55.11	40.42
TraesCS5A01G391700.1	Wheat	nucleus	55.68	40.16
EER90862	Sorghum	nucleus	55.68	40.0
TraesCS2B01G200800.1	Wheat	nucleus	60.23	39.7
TraesCS2A01G174300.3	Wheat	nucleus	60.23	39.7
TraesCS2D01G181400.3	Wheat	nucleus	60.23	39.7
GSMUA_Achr8P04330_001	Banana	nucleus	54.55	39.18
KRH45099	Soybean	nucleus	55.11	39.11
TraesCS5B01G396600.2	Wheat	nucleus	55.68	39.04
Bra012997.1-P	Field mustard	nucleus	53.41	39.0
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	55.68	38.58
Bra004007.1-P	Field mustard	nucleus	58.52	38.01
TraesCS2D01G262700.1	Wheat	nucleus	57.39	37.27
Zm00001d018667_P003	Maize	nucleus	56.82	36.9
GSMUA_Achr3P02280_001	Banana	nucleus	55.11	36.88
TraesCS2A01G261200.2	Wheat	nucleus	57.39	36.86
TraesCS2B01G281000.1	Wheat	nucleus	57.39	36.86
Os07t0108900-02	Rice	nucleus	55.68	36.7
EER95753	Sorghum	nucleus	56.25	36.67
KRH01382	Soybean	nucleus	52.27	36.36
GSMUA_Achr10P...	Banana	nucleus	58.52	36.14
Zm00001d013259_P002	Maize	nucleus	56.82	35.84
Os12t0501700-00	Rice	nucleus	45.45	34.33
GSMUA_Achr3P25280_001	Banana	nucleus	51.7	34.21
Bra010955.1-P	Field mustard	nucleus	47.16	34.02
Bra032814.1-P	Field mustard	nucleus	48.3	33.6
Bra030032.1-P	Field mustard	nucleus	47.73	33.33
HORVU2Hr1G063800.7	Barley	nucleus, plastid	57.39	33.01
Bra008674.1-P	Field mustard	nucleus	47.16	32.94
Bra039170.1-P	Field mustard	nucleus	46.59	32.8
Zm00001d034045_P003	Maize	nucleus	53.98	32.65
Zm00001d007949_P001	Maize	nucleus	56.25	32.46
Bra006322.1-P	Field mustard	nucleus	46.02	32.4
KXG23502	Sorghum	nucleus	40.91	32.29
Bra021470.1-P	Field mustard	nucleus	46.02	32.14
Bra037895.1-P	Field mustard	nucleus	41.48	31.74
HORVU5Hr1G095630.3	Barley	nucleus, plastid	55.11	31.6
Bra000392.1-P	Field mustard	nucleus	46.02	31.52
Bra004927.1-P	Field mustard	nucleus	42.61	30.99
Zm00001d023736_P001	Maize	nucleus	44.32	30.35
Bra025126.1-P	Field mustard	nucleus	44.32	30.35
Bra014454.1-P	Field mustard	nucleus	38.64	29.57
Bra000696.1-P	Field mustard	nucleus	38.64	29.44
Bra013364.1-P	Field mustard	nucleus	42.05	29.37
Bra012564.1-P	Field mustard	nucleus	41.48	29.08
Bra026543.1-P	Field mustard	nucleus	44.32	29.0
Bra011797.1-P	Field mustard	nucleus	37.5	28.95
Bra014552.1-P	Field mustard	nucleus	40.34	28.63
Bra007419.1-P	Field mustard	nucleus	39.77	28.57
Bra010623.1-P	Field mustard	nucleus	34.66	28.5
Bra017638.1-P	Field mustard	nucleus	38.64	28.33
Bra004716.1-P	Field mustard	nucleus	39.2	28.28
Bra030222.1-P	Field mustard	nucleus	35.8	27.75
Bra039921.1-P	Field mustard	nucleus	34.09	26.43
Bra017376.1-P	Field mustard	nucleus	34.09	24.69
Bra003356.1-P	Field mustard	nucleus	36.93	23.81
Bra011509.1-P	Field mustard	nucleus	37.5	22.76
Bra040719.1-P	Field mustard	nucleus	18.75	19.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra025411	EnsemblPlants:Bra025411.1	EnsemblPlants:Bra025411.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4E9F5
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF244	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000253FA6A	SEG:seg	:	:	:

Description

AT3G30260 (E=3e-073) AGL79 | AGL79 (AGAMOUS-LIKE 79); DNA binding / transcription factor

Coordinates

chrA06:-:21699985..21703388

Molecular Weight (calculated)

20253.9 Da

IEP (calculated)

10.679

GRAVY (calculated)

-0.588

Length

176 amino acids

Sequence
(BLAST)

001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KVQEISVLCD ADVALIVFSP KGKLFEYSAG SSMESILDRY ERCSFAGQNI PTPSLDSQGE CSTECSKLLR
101: MIDAMQRSLR HLKGEEVDAL SIRELQGLEV QLDTSLKRIR SRKNQLMVES ITQLQKKEKE LKELKKHLTK KVKRMS

Best Arabidopsis Sequence Match ( AT3G30260.1 )
(BLAST)

001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE

Arabidopsis Description

AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.