Factsheet for PGSC0003DMT400003485

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30260.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT3G30260.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT3G30260.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089210.2.1	Tomato	nucleus	95.14	94.0
PGSC0003DMT400068325	Potato	nucleus	65.59	69.23
CDY19977	Canola	nucleus	27.13	65.69
VIT_14s0083g01030.t01	Wine grape	nucleus	65.59	65.59
Bra025411.1-P	Field mustard	nucleus	44.94	63.07
PGSC0003DMT400063313	Potato	nucleus	58.3	58.06
PGSC0003DMT400072888	Potato	nucleus	56.68	57.38
KRH45099	Soybean	nucleus	56.28	56.05
PGSC0003DMT400010451	Potato	nucleus	55.06	54.4
GSMUA_Achr2P13650_001	Banana	nucleus	53.44	53.66
KRH01382	Soybean	nucleus	54.66	53.36
KRH18331	Soybean	nucleus	52.63	53.28
GSMUA_Achr6P00050_001	Banana	nucleus	50.61	51.65
KRG93701	Soybean	nucleus	51.01	51.64
EER90862	Sorghum	nucleus	50.61	51.02
EER97510	Sorghum	nucleus	52.23	50.99
TraesCS5A01G391700.1	Wheat	nucleus	50.2	50.82
GSMUA_Achr4P23540_001	Banana	nucleus	51.01	50.81
GSMUA_Achr7P00460_001	Banana	nucleus	50.2	49.6
Os03t0752800-02	Rice	nucleus	49.39	49.59
TraesCS5B01G396600.2	Wheat	nucleus	50.2	49.4
CDX86353	Canola	nucleus	49.8	49.4
Os07t0605200-01	Rice	nucleus	49.8	49.4
CDY45899	Canola	nucleus	49.39	49.0
GSMUA_Achr8P04330_001	Banana	nucleus	48.58	48.98
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	50.2	48.82
Bra036201.1-P	Field mustard	nucleus	48.99	48.79
CDY00082	Canola	nucleus	48.99	48.79
Zm00001d022088_P004	Maize	nucleus	50.2	48.06
TraesCS2D01G262700.1	Wheat	nucleus	52.63	47.97
Zm00001d018667_P003	Maize	nucleus	52.63	47.97
TraesCS2A01G261200.2	Wheat	nucleus	52.63	47.45
TraesCS2B01G281000.1	Wheat	nucleus	52.63	47.45
EER95753	Sorghum	nucleus	51.82	47.41
GSMUA_Achr3P30440_001	Banana	nucleus	44.13	47.39
TraesCS2A01G174300.3	Wheat	nucleus	51.01	47.19
AT3G30260.1	Thale cress	nucleus	47.37	46.99
TraesCS2B01G200800.1	Wheat	nucleus	50.61	46.82
TraesCS2D01G181400.3	Wheat	nucleus	50.61	46.82
Os07t0108900-02	Rice	nucleus	50.2	46.44
GSMUA_Achr10P...	Banana	nucleus	53.44	46.32
GSMUA_Achr3P02280_001	Banana	nucleus	48.18	45.25
Zm00001d013259_P002	Maize	nucleus	50.61	44.8
GSMUA_Achr3P25280_001	Banana	nucleus	46.15	42.86
HORVU2Hr1G063800.7	Barley	nucleus, plastid	52.63	42.48
PGSC0003DMT400056363	Potato	nucleus	41.3	42.32
Zm00001d007949_P001	Maize	nucleus	52.23	42.3
Os12t0501700-00	Rice	nucleus	39.68	42.06
PGSC0003DMT400063315	Potato	nucleus	41.7	41.87
PGSC0003DMT400003483	Potato	nucleus	41.3	41.46
Zm00001d034045_P003	Maize	nucleus	48.18	40.89
PGSC0003DMT400072891	Potato	nucleus	39.68	40.5
HORVU5Hr1G095630.3	Barley	nucleus, plastid	49.39	39.74
KXG23502	Sorghum	nucleus	35.63	39.46
PGSC0003DMT400000383	Potato	nucleus	39.68	38.43
CDX85287	Canola	nucleus	28.34	37.43
PGSC0003DMT400004875	Potato	nucleus	27.53	36.17
PGSC0003DMT400039313	Potato	nucleus	29.15	36.0
Zm00001d023736_P001	Maize	nucleus	37.25	35.8
CDY35780	Canola	nucleus	28.34	35.53
PGSC0003DMT400065614	Potato	nucleus	31.17	33.19
PGSC0003DMT400013248	Potato	nucleus	30.36	32.33
PGSC0003DMT400073134	Potato	nucleus	31.58	31.45
PGSC0003DMT400044552	Potato	nucleus	29.15	28.35
PGSC0003DMT400024193	Potato	nucleus	16.19	22.35
PGSC0003DMT400005159	Potato	nucleus	17.81	20.75

Protein Annotations

EntrezGene:102602089	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0ZLS2	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400001378	PGSC:PGSC0003DMG400001378	EnsemblPlants:PGSC0003DMT400003485	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF241	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002965F50	RefSeq:XP_006338337.1	SEG:seg

Description

MADS-box transcription factor FBP29 [Source:PGSC_GENE;Acc:PGSC0003DMG400001378]

Coordinates

chr2:-:45341112..45345702

Molecular Weight (calculated)

28356.5 Da

IEP (calculated)

9.953

GRAVY (calculated)

-0.917

Length

247 amino acids

Sequence
(BLAST)

001: MGRGRVELKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFQYSST DSSMESILER YERYSYAETQ MNANDSDPKE NWSVEYPKLM
101: SRIELLQRNI RHYMGQDLDP LSLRELQSIE QQIDTSLKRI RSRKNQLMHE SISELQKKER ALQEQNNLIT KKLKENEKTQ PNSSTFHVPP SHSHHLPNLT
201: IGGAFGGMNR DGSGQVHQYP GSNNNNNNNS NSSLIPPWML RHVSNEG

Best Arabidopsis Sequence Match ( AT3G30260.1 )
(BLAST)

001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE

Arabidopsis Description

AGL79AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.