Factsheet for PGSC0003DMT400073134

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000383
PGSC0003DMT400003483
PGSC0003DMT400010451
PGSC0003DMT400024247
PGSC0003DMT400056363
PGSC0003DMT400063313
PGSC0003DMT400073134

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	PGSC0003DMT400056363	AT1G24260.2	9418042
AT4G18960.1	PGSC0003DMT400000383	AT2G45650.1	9418042
AT4G18960.1	PGSC0003DMT400003483	AT3G02310.1	15604664
AT4G18960.1	PGSC0003DMT400003483	AT3G02310.1	15805477
AT4G18960.1	PGSC0003DMT400003483	AT3G02310.1	9418042
AT4G18960.1	PGSC0003DMT400000383	AT3G61120.1	15805477
AT4G18960.1	PGSC0003DMT400073134	AT4G18960.1	14555696
AT4G18960.1	PGSC0003DMT400024247	AT4G24540.1	15805477
AT4G18960.1	PGSC0003DMT400010451	AT5G60910.1	15805477
AT4G18960.1	PGSC0003DMT400063313	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071730.2.1	Tomato	nucleus	95.56	95.56
VIT_10s0003g02070.t01	Wine grape	nucleus	74.6	81.86
KRH21150	Soybean	nucleus	74.6	76.13
KRH42930	Soybean	nucleus	68.95	70.37
CDY09267	Canola	nucleus	69.76	69.48
GSMUA_Achr5P06590_001	Banana	nucleus	48.79	69.14
GSMUA_Achr10P...	Banana	nucleus	63.71	69.0
KRH59043	Soybean	nucleus	67.34	68.72
AT4G18960.1	Thale cress	nucleus	69.35	68.25
CDX78909	Canola	nucleus	69.35	68.25
Bra013364.1-P	Field mustard	nucleus	69.35	68.25
CDX98597	Canola	nucleus	67.74	66.93
Bra012564.1-P	Field mustard	nucleus	67.74	66.93
GSMUA_Achr6P14760_001	Banana	nucleus	63.31	61.81
PGSC0003DMT400044552	Potato	nucleus	62.5	61.02
Zm00001d039434_P001	Maize	nucleus	61.29	58.02
TraesCS3D01G140200.2	Wheat	nucleus	63.31	57.3
HORVU3Hr1G026650.1	Barley	nucleus	62.5	57.2
EES00105	Sorghum	nucleus	61.69	56.88
PGSC0003DMT400065614	Potato	nucleus	52.82	56.47
PGSC0003DMT400013248	Potato	nucleus	52.82	56.47
Os01t0201700-02	Rice	nucleus	62.1	55.8
TraesCS3A01G314300.1	Wheat	nucleus	61.29	55.68
CDX99406	Canola	nucleus	68.95	54.81
TraesCS1D01G127700.1	Wheat	nucleus	58.87	54.28
TraesCS1B01G144800.1	Wheat	nucleus	58.87	54.28
TraesCS1A01G125800.1	Wheat	nucleus	58.47	53.9
Os05t0203800-02	Rice	nucleus	58.87	53.68
TraesCS1D01G262700.1	Wheat	nucleus	53.63	53.2
Os01t0886200-01	Rice	nucleus	56.45	52.83
TraesCS1B01G273300.1	Wheat	nucleus	53.63	52.16
TraesCS5B01G115100.1	Wheat	nucleus	52.82	51.98
TraesCS5D01G118200.1	Wheat	nucleus	52.42	51.59
HORVU1Hr1G023620.1	Barley	nucleus	52.42	51.59
Zm00001d042591_P002	Maize	nucleus	55.65	51.49
EES01878	Sorghum	nucleus	56.85	50.9
TraesCS5A01G117500.1	Wheat	nucleus	52.02	50.79
GSMUA_Achr10P...	Banana	nucleus	65.32	50.78
TraesCS3B01G157500.4	Wheat	nucleus	62.9	50.32
Zm00001d023955_P003	Maize	nucleus	53.63	50.19
EES15827	Sorghum	nucleus	52.82	48.7
Os12t0207000-01	Rice	nucleus	52.82	48.52
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	53.63	48.36
Zm00001d041781_P001	Maize	nucleus	54.84	47.39
OQU77603	Sorghum	nucleus	55.24	46.92
HORVU1Hr1G029220.1	Barley	nucleus	60.89	46.32
Zm00001d037737_P001	Maize	nucleus	55.24	44.77
Zm00001d008882_P001	Maize	nucleus	57.26	43.16
PGSC0003DMT400039313	Potato	nucleus	31.85	39.5
PGSC0003DMT400056363	Potato	nucleus	36.29	37.34
PGSC0003DMT400072891	Potato	nucleus	36.29	37.19
PGSC0003DMT400063315	Potato	nucleus	35.89	36.18
PGSC0003DMT400000383	Potato	nucleus	37.1	36.08
PGSC0003DMT400004875	Potato	nucleus	26.61	35.11
PGSC0003DMT400068325	Potato	nucleus	32.26	34.19
PGSC0003DMT400010451	Potato	nucleus	33.87	33.6
PGSC0003DMT400003483	Potato	nucleus	33.06	33.33
PGSC0003DMT400072888	Potato	nucleus	32.26	32.79
PGSC0003DMT400003485	Potato	nucleus	31.45	31.58
PGSC0003DMT400063313	Potato	nucleus	31.05	31.05
PGSC0003DMT400005159	Potato	nucleus	19.76	23.11
PGSC0003DMT400024193	Potato	nucleus	16.53	22.91

Protein Annotations

EntrezGene:102586087	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008237	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:M1CRK7	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
EnsemblPlantsGene:PGSC0003DMG400028442	PGSC:PGSC0003DMG400028442	EnsemblPlants:PGSC0003DMT400073134	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002958019	RefSeq:XP_006358067.1	:	:

Description

Floral homeotic protein AGAMOUS [Source:PGSC_GENE;Acc:PGSC0003DMG400028442]

Coordinates

chr2:-:31027789..31034809

Molecular Weight (calculated)

28586.9 Da

IEP (calculated)

9.876

GRAVY (calculated)

-0.925

Length

248 amino acids

Sequence
(BLAST)

001: MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE
101: ANAQYYQQEA SKLRAQIGNL QNQNRNMLGE SLGSMNSKEL KSLEQKIEKG ISKIRSKKNE LLFAEIEYMQ KREVDLHNNN QYLRAKIAET ERAQHQHQQM
201: NLMPGSSSSY HELVPPPQQF DTRNYLQVNG LQTNNHYPRQ DQPPIQLV

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.