Factsheet for PGSC0003DMT400044552

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055920.2.1	Tomato	nucleus	96.06	91.39
KRH14461	Soybean	nucleus	33.07	80.77
KRH73684	Soybean	nucleus	63.39	65.45
KRH46066	Soybean	nucleus	61.81	63.56
KRG98899	Soybean	nucleus	61.42	63.41
PGSC0003DMT400073134	Potato	nucleus	61.02	62.5
VIT_12s0142g00360.t01	Wine grape	nucleus	66.93	62.04
GSMUA_Achr5P06590_001	Banana	nucleus	42.52	61.71
GSMUA_Achr10P...	Banana	nucleus	55.12	61.14
CDX98330	Canola	nucleus	59.06	60.48
CDX79857	Canola	nucleus	57.48	59.84
Bra004716.1-P	Field mustard	nucleus	57.48	59.84
Bra014552.1-P	Field mustard	nucleus	57.48	58.87
Bra007419.1-P	Field mustard	nucleus	56.69	58.78
AT2G42830.2	Thale cress	nucleus	56.3	57.66
GSMUA_Achr6P14760_001	Banana	nucleus	55.12	55.12
AT3G58780.4	Thale cress	nucleus	60.24	54.45
PGSC0003DMT400065614	Potato	nucleus	49.61	54.31
CDY49254	Canola	nucleus	57.48	53.09
PGSC0003DMT400013248	Potato	nucleus	48.03	52.59
CDX89005	Canola	nucleus	57.09	52.54
CDY00589	Canola	nucleus	56.69	52.36
Bra003356.1-P	Field mustard	nucleus	54.72	50.92
EES00105	Sorghum	nucleus	53.54	50.56
Zm00001d039434_P001	Maize	nucleus	51.97	50.38
HORVU3Hr1G026650.1	Barley	nucleus	53.54	50.18
TraesCS3D01G140200.2	Wheat	nucleus	53.54	49.63
TraesCS3A01G314300.1	Wheat	nucleus	53.15	49.45
TraesCS1B01G144800.1	Wheat	nucleus	52.36	49.44
TraesCS5D01G118200.1	Wheat	nucleus	48.82	49.21
TraesCS1D01G127700.1	Wheat	nucleus	51.97	49.07
TraesCS5B01G115100.1	Wheat	nucleus	48.43	48.81
TraesCS1A01G125800.1	Wheat	nucleus	51.57	48.7
Os01t0201700-02	Rice	nucleus	52.36	48.19
TraesCS5A01G117500.1	Wheat	nucleus	48.03	48.03
TraesCS1D01G262700.1	Wheat	nucleus	47.24	48.0
HORVU1Hr1G023620.1	Barley	nucleus	46.46	46.83
GSMUA_Achr10P...	Banana	nucleus	58.66	46.71
TraesCS1B01G273300.1	Wheat	nucleus	46.85	46.67
Os01t0886200-01	Rice	nucleus	48.43	46.42
Os12t0207000-01	Rice	nucleus	49.21	46.3
Zm00001d042591_P002	Maize	nucleus	48.43	45.9
Os05t0203800-02	Rice	nucleus	48.82	45.59
EES01878	Sorghum	nucleus	49.21	45.13
Zm00001d023955_P003	Maize	nucleus	46.46	44.53
TraesCS3B01G157500.4	Wheat	nucleus	53.54	43.87
EES15827	Sorghum	nucleus	46.46	43.87
OQU77603	Sorghum	nucleus	50.0	43.49
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	46.85	43.27
CDX67765	Canola	nucleus	58.66	42.82
Zm00001d041781_P001	Maize	nucleus	48.03	42.51
HORVU1Hr1G029220.1	Barley	nucleus	51.57	40.18
Zm00001d037737_P001	Maize	nucleus	47.64	39.54
Zm00001d008882_P001	Maize	nucleus	49.61	38.3
PGSC0003DMT400039313	Potato	nucleus	28.35	36.0
PGSC0003DMT400072891	Potato	nucleus	33.46	35.12
PGSC0003DMT400004875	Potato	nucleus	25.2	34.04
PGSC0003DMT400003483	Potato	nucleus	32.28	33.33
PGSC0003DMT400056363	Potato	nucleus	31.5	33.2
PGSC0003DMT400010451	Potato	nucleus	31.89	32.4
PGSC0003DMT400000383	Potato	nucleus	32.28	32.16
PGSC0003DMT400063315	Potato	nucleus	31.1	32.11
PGSC0003DMT400063313	Potato	nucleus	30.32	31.05
PGSC0003DMT400072888	Potato	nucleus	29.53	30.74
PGSC0003DMT400068325	Potato	nucleus	27.56	29.91
PGSC0003DMT400003485	Potato	nucleus	28.35	29.15
PGSC0003DMT400024193	Potato	nucleus	16.54	23.46
PGSC0003DMT400005159	Potato	nucleus	17.32	20.75

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:M1BGD1	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
EnsemblPlantsGene:PGSC0003DMG400017295	PGSC:PGSC0003DMG400017295	EnsemblPlants:PGSC0003DMT400044552	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002960BA6	SEG:seg	:	:

Description

TAGL1 transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017295]

Coordinates

chr7:+:51027282..51036001

Molecular Weight (calculated)

28577.7 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.822

Length

254 amino acids

Sequence
(BLAST)

001: MVFPNNQELL VDESSSQLRK TGAGGGGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVSL IVFSSRGRLY EYANNSVRAT IDRYKKHHAD
101: STSTGSVSEA NTQYYQQEAS KLRRQIRDIQ TYNRQIVGEA LSSLSPRDLK NLEGKLEKAI GRVRSKKNEL LFSEIELMQK RIAEVERAQE QMNLMPGGGG
201: GGGGGSDQYH HQPNYEDARN NFLPVNLLEP NPHYSRRDDG DQTPLQLVYA SLPS

Best Arabidopsis Sequence Match ( AT3G58780.1 )
(BLAST)

001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV

Arabidopsis Description

SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.