Factsheet for HORVU1Hr1G029220.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G032300.1
HORVU1Hr1G008290.4
HORVU1Hr1G008300.3
HORVU1Hr1G023620.1
HORVU1Hr1G029220.1
HORVU2Hr1G063800.7
HORVU2Hr1G080490.1
HORVU3Hr1G026650.1
HORVU4Hr1G077850.13
HORVU5Hr1G000370.3
HORVU5Hr1G076400.1
HORVU5Hr1G095630.3
HORVU6Hr1G066140.9
HORVU6Hr1G073040.2
HORVU6Hr1G077300.8
HORVU7Hr1G023940.2
HORVU7Hr1G024000.2
HORVU7Hr1G036130.10
HORVU7Hr1G054220.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	HORVU0Hr1G032300.1	AT2G45650.1	9418042
AT4G18960.1	HORVU6Hr1G066140.9	AT2G45650.1	9418042
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	15604664
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	15604664
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	15805477
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	15805477
AT4G18960.1	HORVU5Hr1G076400.1	AT3G02310.1	9418042
AT4G18960.1	HORVU7Hr1G054220.3	AT3G02310.1	9418042
AT4G18960.1	HORVU1Hr1G008290.4	AT3G57230.1	15805477
AT4G18960.1	HORVU1Hr1G008300.3	AT3G57230.1	15805477
AT4G18960.1	HORVU2Hr1G080490.1	AT3G57230.1	15805477
AT4G18960.1	HORVU5Hr1G000370.3	AT3G57230.1	15805477
AT4G18960.1	HORVU6Hr1G073040.2	AT3G57230.1	15805477
AT4G18960.1	HORVU7Hr1G023940.2	AT3G57230.1	15805477
AT4G18960.1	HORVU7Hr1G024000.2	AT3G57230.1	15805477
AT4G18960.1	HORVU0Hr1G032300.1	AT3G61120.1	15805477
AT4G18960.1	HORVU6Hr1G066140.9	AT3G61120.1	15805477
AT4G18960.1	HORVU1Hr1G023620.1	AT4G18960.1	14555696
AT4G18960.1	HORVU1Hr1G029220.1	AT4G18960.1	14555696
AT4G18960.1	HORVU3Hr1G026650.1	AT4G18960.1	14555696
AT4G18960.1	HORVU4Hr1G077850.13	AT4G24540.1	15805477
AT4G18960.1	HORVU6Hr1G077300.8	AT4G24540.1	15805477
AT4G18960.1	HORVU7Hr1G036130.10	AT4G24540.1	15805477
AT4G18960.1	HORVU2Hr1G063800.7	AT5G60910.1	15805477
AT4G18960.1	HORVU5Hr1G095630.3	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G127700.1	Wheat	nucleus	76.99	93.31
TraesCS1A01G125800.1	Wheat	nucleus	76.69	92.94
TraesCS1B01G144800.1	Wheat	nucleus	76.38	92.57
Os05t0203800-02	Rice	nucleus	63.8	76.47
KRH14461	Soybean	nucleus	23.01	72.12
GSMUA_Achr10P...	Banana	nucleus	46.32	65.94
HORVU3Hr1G026650.1	Barley	nucleus	54.29	65.31
OQU77603	Sorghum	nucleus	57.36	64.04
VIT_10s0003g02070.t01	Wine grape	nucleus	43.87	63.27
PGSC0003DMT400073134	Potato	nucleus	46.32	60.89
Solyc02g071730.2.1	Tomato	nucleus	46.32	60.89
Zm00001d037737_P001	Maize	nucleus	56.13	59.8
KRH21150	Soybean	nucleus	44.48	59.67
CDY09267	Canola	nucleus	45.4	59.44
CDX78909	Canola	nucleus	45.71	59.13
Bra013364.1-P	Field mustard	nucleus	45.71	59.13
CDX98597	Canola	nucleus	45.09	58.57
Bra012564.1-P	Field mustard	nucleus	45.09	58.57
KRH42930	Soybean	nucleus	43.56	58.44
AT4G18960.1	Thale cress	nucleus	45.09	58.33
GSMUA_Achr6P14760_001	Banana	nucleus	45.4	58.27
KRH59043	Soybean	nucleus	42.64	57.2
KRH46066	Soybean	nucleus	43.25	57.09
KRG98899	Soybean	nucleus	42.94	56.91
KRH73684	Soybean	nucleus	42.64	56.5
HORVU1Hr1G023620.1	Barley	nucleus	42.64	55.16
CDX79857	Canola	nucleus	39.88	53.28
Bra004716.1-P	Field mustard	nucleus	39.88	53.28
Bra007419.1-P	Field mustard	nucleus	39.88	53.06
CDX98330	Canola	nucleus	40.18	52.82
Bra014552.1-P	Field mustard	nucleus	40.18	52.82
Solyc07g055920.2.1	Tomato	nucleus	42.64	52.06
AT2G42830.2	Thale cress	nucleus	39.26	51.61
PGSC0003DMT400044552	Potato	nucleus	40.18	51.57
VIT_12s0142g00360.t01	Wine grape	nucleus	41.72	49.63
GSMUA_Achr10P...	Banana	nucleus	48.16	49.22
CDX99406	Canola	nucleus	46.63	48.72
AT3G58780.4	Thale cress	nucleus	41.41	48.04
CDY49254	Canola	nucleus	40.18	47.64
CDX89005	Canola	nucleus	39.88	47.1
CDY00589	Canola	nucleus	39.57	46.91
Bra003356.1-P	Field mustard	nucleus	36.5	43.59
CDX67765	Canola	nucleus	41.1	38.51
HORVU6Hr1G073040.2	Barley	nucleus	27.61	37.34
HORVU5Hr1G000370.3	Barley	nucleus	23.62	37.2
HORVU5Hr1G095710.1	Barley	nucleus	26.38	36.29
HORVU0Hr1G032300.1	Barley	nucleus	29.14	35.58
HORVU6Hr1G066140.9	Barley	nucleus	29.14	35.45
HORVU5Hr1G000480.1	Barley	nucleus	20.55	35.26
HORVU5Hr1G076400.1	Barley	nucleus	26.69	34.52
HORVU7Hr1G023940.2	Barley	nucleus	23.62	33.48
HORVU7Hr1G054220.3	Barley	nucleus	25.77	32.81
HORVU7Hr1G025700.6	Barley	nucleus	26.69	31.52
HORVU1Hr1G008290.4	Barley	nucleus	22.7	30.83
HORVU7Hr1G024000.2	Barley	nucleus	24.54	29.96
HORVU2Hr1G063800.7	Barley	nucleus, plastid	25.15	26.8
HORVU2Hr1G080490.1	Barley	nucleus, plastid	25.15	26.8
HORVU5Hr1G095630.3	Barley	nucleus, plastid	25.15	26.71
HORVU1Hr1G008300.3	Barley	nucleus	22.7	26.06
HORVU4Hr1G067680.14	Barley	nucleus	22.39	25.7

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287F101	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
EnsemblPlantsGene:HORVU1Hr1G029220	EnsemblPlants:HORVU1Hr1G029220.1	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF332	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000B46731A	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:162380897..162388573

Molecular Weight (calculated)

37122.4 Da

IEP (calculated)

9.716

GRAVY (calculated)

-0.691

Length

326 amino acids

Sequence
(BLAST)

001: KKREEEIPRA TAATTEYRPS PLHPLLACYL SPLNTRFSLI CLPHLSLYPS HFSLAPTKTN MQILNEKLAT PSTGLMVKES VSPGLGSAGA AAEKMGRGRI
101: EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALV VFSSRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK LRQQITTLQN
201: SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL SAEIEYMQRR EMELQNNNFY LREKVAETER GQQQTLNMMG AASTSNEYEQ NMIQCDPRTF
301: LQFNIMQQPQ YYTQQEDRKT FNSVER

Best Arabidopsis Sequence Match ( AT4G09960.1 )
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG

Arabidopsis Description

STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.