Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G045600.1 | Wheat | nucleus | 81.67 | 83.76 |
TraesCS1B01G058200.1 | Wheat | nucleus | 73.75 | 79.37 |
Os06t0347700-00 | Rice | nucleus | 44.17 | 72.11 |
HORVU1Hr1G008300.3 | Barley | nucleus | 71.67 | 60.56 |
GSMUA_Achr3P07310_001 | Banana | nucleus | 51.25 | 50.41 |
HORVU5Hr1G000370.3 | Barley | nucleus | 40.83 | 47.34 |
GSMUA_Achr9P15540_001 | Banana | nucleus | 47.08 | 46.12 |
HORVU6Hr1G073040.2 | Barley | nucleus | 44.58 | 44.4 |
HORVU7Hr1G023940.2 | Barley | nucleus | 42.5 | 44.35 |
CDX75412 | Canola | nucleus | 43.75 | 43.75 |
CDX69036 | Canola | nucleus | 43.75 | 43.75 |
HORVU5Hr1G000480.1 | Barley | nucleus | 34.58 | 43.68 |
GSMUA_Achr7P12610_001 | Banana | nucleus | 42.5 | 43.4 |
CDX72465 | Canola | nucleus | 42.92 | 42.92 |
GSMUA_Achr5P24560_001 | Banana | nucleus | 42.08 | 42.8 |
KRH42047 | Soybean | nucleus | 42.92 | 42.74 |
CDY49287 | Canola | nucleus | 42.5 | 42.5 |
Bra017638.1-P | Field mustard | nucleus | 42.5 | 42.5 |
AT3G57230.1 | Thale cress | nucleus | 42.08 | 42.08 |
HORVU2Hr1G080490.1 | Barley | nucleus, plastid | 48.75 | 38.24 |
HORVU7Hr1G024000.2 | Barley | nucleus | 40.0 | 35.96 |
Solyc01g106170.2.1 | Tomato | mitochondrion | 21.25 | 34.46 |
Bra011509.1-P | Field mustard | nucleus | 40.42 | 33.45 |
HORVU1Hr1G023620.1 | Barley | nucleus | 32.08 | 30.56 |
HORVU3Hr1G026650.1 | Barley | nucleus | 32.5 | 28.78 |
HORVU5Hr1G076400.1 | Barley | nucleus | 30.0 | 28.57 |
HORVU5Hr1G095710.1 | Barley | nucleus | 27.08 | 27.43 |
HORVU7Hr1G054220.3 | Barley | nucleus | 29.17 | 27.34 |
HORVU0Hr1G032300.1 | Barley | nucleus | 29.58 | 26.59 |
HORVU6Hr1G066140.9 | Barley | nucleus | 29.58 | 26.49 |
HORVU7Hr1G025700.6 | Barley | nucleus | 29.58 | 25.72 |
HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 32.08 | 25.16 |
HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 30.83 | 24.1 |
HORVU4Hr1G067680.14 | Barley | nucleus | 27.92 | 23.59 |
HORVU1Hr1G029220.1 | Barley | nucleus | 30.83 | 22.7 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287EKL3 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
EnsemblPlantsGene:HORVU1Hr1G008290 | EnsemblPlants:HORVU1Hr1G008290.4 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
UniParc:UPI000B48141D | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:18102585..18109590
Molecular Weight (calculated)
27572.0 Da
IEP (calculated)
8.439
GRAVY (calculated)
-0.632
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTVIER IEDTTSRQVT FSKRKGGLFK KARELGVLCD AQVGILLFSN TGRLYEYSNS TSGVNSIIER YQKVKEGQQF MSASAEAKFW QAEAERLRQQ
101: LQNLHEEHRQ LLGQNLPGLG LEGLKGLENQ LETSIHNIRL TKDKLIIDKI EELNKKVNAF NMENIELHKK LNIIRRENMD LQNKVEVNGI ITSSTSQYNI
201: AARIDPVHLE LSHPDHAERN EQPQSPTLWY GKDYVFDNLL
101: LQNLHEEHRQ LLGQNLPGLG LEGLKGLENQ LETSIHNIRL TKDKLIIDKI EELNKKVNAF NMENIELHKK LNIIRRENMD LQNKVEVNGI ITSSTSQYNI
201: AARIDPVHLE LSHPDHAERN EQPQSPTLWY GKDYVFDNLL
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.