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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G57230.1 HORVU2Hr1G063800.7 AT1G69120.1 15805477
AT3G57230.1 HORVU5Hr1G095630.3 AT1G69120.1 15805477
AT3G57230.1 HORVU7Hr1G076310.14 AT1G71692.1 15805477
AT3G57230.1 HORVU0Hr1G032300.1 AT2G45650.1 15805477
AT3G57230.1 HORVU6Hr1G066140.9 AT2G45650.1 15805477
AT3G57230.1 HORVU1Hr1G051660.10 AT2G45660.1 15805477
AT3G57230.1 HORVU3Hr1G095080.3 AT2G45660.1 15805477
AT3G57230.1 HORVU3Hr1G095090.1 AT2G45660.1 15805477
AT3G57230.1 HORVU3Hr1G095200.4 AT2G45660.1 15805477
AT3G57230.1 HORVU3Hr1G095240.2 AT2G45660.1 15805477
AT3G57230.1 HORVU4Hr1G085370.1 AT2G45660.1 15805477
AT3G57230.1 HORVU4Hr1G085450.1 AT2G45660.1 15805477
AT3G57230.1 HORVU6Hr1G002270.1 AT2G45660.1 15805477
AT3G57230.1 HORVU6Hr1G002330.14 AT2G45660.1 15805477
AT3G57230.1 HORVU7Hr1G054320.2 AT2G45660.1 15805477
AT3G57230.1 HORVU7Hr1G054390.1 AT2G45660.1 15805477
AT3G57230.1 HORVU5Hr1G076400.1 AT3G02310.1 15805477
AT3G57230.1 HORVU7Hr1G054220.3 AT3G02310.1 15805477
AT3G57230.1 HORVU1Hr1G008290.4 AT3G57230.1 15805477
AT3G57230.1 HORVU1Hr1G008300.3 AT3G57230.1 15805477
AT3G57230.1 HORVU2Hr1G080490.1 AT3G57230.1 15805477
AT3G57230.1 HORVU5Hr1G000370.3 AT3G57230.1 15805477
AT3G57230.1 HORVU6Hr1G073040.2 AT3G57230.1 15805477
AT3G57230.1 HORVU7Hr1G023940.2 AT3G57230.1 15805477
AT3G57230.1 HORVU7Hr1G024000.2 AT3G57230.1 15805477
AT3G57230.1 HORVU1Hr1G023620.1 AT4G18960.1 15805477
AT3G57230.1 HORVU1Hr1G029220.1 AT4G18960.1 15805477
AT3G57230.1 HORVU3Hr1G026650.1 AT4G18960.1 15805477
AT3G57230.1 HORVU4Hr1G077850.13 AT4G24540.1 15805477
AT3G57230.1 HORVU6Hr1G077300.8 AT4G24540.1 15805477
AT3G57230.1 HORVU7Hr1G036130.10 AT4G24540.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G045600.1 Wheat nucleus 81.67 83.76
TraesCS1B01G058200.1 Wheat nucleus 73.75 79.37
Os06t0347700-00 Rice nucleus 44.17 72.11
HORVU1Hr1G008300.3 Barley nucleus 71.67 60.56
GSMUA_Achr3P07310_001 Banana nucleus 51.25 50.41
HORVU5Hr1G000370.3 Barley nucleus 40.83 47.34
GSMUA_Achr9P15540_001 Banana nucleus 47.08 46.12
HORVU6Hr1G073040.2 Barley nucleus 44.58 44.4
HORVU7Hr1G023940.2 Barley nucleus 42.5 44.35
CDX75412 Canola nucleus 43.75 43.75
CDX69036 Canola nucleus 43.75 43.75
HORVU5Hr1G000480.1 Barley nucleus 34.58 43.68
GSMUA_Achr7P12610_001 Banana nucleus 42.5 43.4
CDX72465 Canola nucleus 42.92 42.92
GSMUA_Achr5P24560_001 Banana nucleus 42.08 42.8
KRH42047 Soybean nucleus 42.92 42.74
CDY49287 Canola nucleus 42.5 42.5
Bra017638.1-P Field mustard nucleus 42.5 42.5
AT3G57230.1 Thale cress nucleus 42.08 42.08
HORVU2Hr1G080490.1 Barley nucleus, plastid 48.75 38.24
HORVU7Hr1G024000.2 Barley nucleus 40.0 35.96
Solyc01g106170.2.1 Tomato mitochondrion 21.25 34.46
Bra011509.1-P Field mustard nucleus 40.42 33.45
HORVU1Hr1G023620.1 Barley nucleus 32.08 30.56
HORVU3Hr1G026650.1 Barley nucleus 32.5 28.78
HORVU5Hr1G076400.1 Barley nucleus 30.0 28.57
HORVU5Hr1G095710.1 Barley nucleus 27.08 27.43
HORVU7Hr1G054220.3 Barley nucleus 29.17 27.34
HORVU0Hr1G032300.1 Barley nucleus 29.58 26.59
HORVU6Hr1G066140.9 Barley nucleus 29.58 26.49
HORVU7Hr1G025700.6 Barley nucleus 29.58 25.72
HORVU2Hr1G063800.7 Barley nucleus, plastid 32.08 25.16
HORVU5Hr1G095630.3 Barley nucleus, plastid 30.83 24.1
HORVU4Hr1G067680.14 Barley nucleus 27.92 23.59
HORVU1Hr1G029220.1 Barley nucleus 30.83 22.7
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10UniProt:A0A287EKL3ncoils:CoilGO:GO:0000977GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983
EnsemblPlantsGene:HORVU1Hr1G008290EnsemblPlants:HORVU1Hr1G008290.4InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879InterPro:MADS_MEF2-like
PFAM:PF00319PFAM:PF01486PRINTS:PR00404PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945
PANTHER:PTHR11945:SF263SMART:SM00432SUPFAM:SSF55455InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sf
UniParc:UPI000B48141DSEG:seg::::
Description
No Description!
Coordinates
chrchr1H:+:18102585..18109590
Molecular Weight (calculated)
27572.0 Da
IEP (calculated)
8.439
GRAVY (calculated)
-0.632
Length
240 amino acids
Sequence
(BLAST)
001: MVRGKTVIER IEDTTSRQVT FSKRKGGLFK KARELGVLCD AQVGILLFSN TGRLYEYSNS TSGVNSIIER YQKVKEGQQF MSASAEAKFW QAEAERLRQQ
101: LQNLHEEHRQ LLGQNLPGLG LEGLKGLENQ LETSIHNIRL TKDKLIIDKI EELNKKVNAF NMENIELHKK LNIIRRENMD LQNKVEVNGI ITSSTSQYNI
201: AARIDPVHLE LSHPDHAERN EQPQSPTLWY GKDYVFDNLL
Best Arabidopsis Sequence Match ( AT2G22630.1 )
(BLAST)
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.