Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g017640.1.1 | Tomato | nucleus | 32.99 | 52.46 |
| HORVU4Hr1G085370.1 | Barley | nucleus | 56.7 | 50.93 |
| HORVU3Hr1G095080.3 | Barley | plastid | 50.52 | 42.24 |
| KRH48297 | Soybean | nucleus | 38.14 | 41.57 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 44.33 | 40.19 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 48.45 | 37.3 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 56.7 | 34.59 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 55.67 | 32.34 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 47.42 | 29.87 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 41.24 | 25.97 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 51.55 | 25.77 |
| HORVU6Hr1G002330.14 | Barley | nucleus | 46.39 | 23.44 |
| KRH40554 | Soybean | nucleus | 45.36 | 20.85 |
| KRH00625 | Soybean | nucleus | 44.33 | 20.57 |
| CDY60689 | Canola | nucleus | 42.27 | 19.25 |
| CDY37054 | Canola | nucleus | 42.27 | 19.25 |
| Bra039324.1-P | Field mustard | nucleus | 42.27 | 19.25 |
| AT2G45660.1 | Thale cress | nucleus | 42.27 | 19.16 |
| Bra000393.1-P | Field mustard | nucleus | 41.24 | 18.78 |
| Bra004928.1-P | Field mustard | nucleus | 41.24 | 18.78 |
| CDX74755 | Canola | nucleus | 41.24 | 18.78 |
| CDY27368 | Canola | nucleus | 41.24 | 18.78 |
| CDY53886 | Canola | nucleus | 41.24 | 18.78 |
| CDY69077 | Canola | nucleus | 41.24 | 18.78 |
| PGSC0003DMT400000028 | Potato | nucleus | 43.3 | 18.75 |
| PGSC0003DMT400026576 | Potato | nucleus | 41.24 | 18.69 |
| KRH65189 | Soybean | nucleus | 42.27 | 17.3 |
| HORVU3Hr1G095090.1 | Barley | cytosol, mitochondrion, nucleus | 59.79 | 17.21 |
| KRH48299 | Soybean | nucleus | 5.15 | 3.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287PYD5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:HORVU4Hr1G085450 | EnsemblPlants:HORVU4Hr1G085450.1 | InterPro:IPR002100 | InterPro:IPR036879 |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF359 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B47A98E | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:+:631707180..631707623
Molecular Weight (calculated)
10098.2 Da
IEP (calculated)
10.608
GRAVY (calculated)
-0.346
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: XXXXXXXGAV ELRRIEDRTS RQVRFCKRRS CLFKKAYELG LLCDAEVALL VFSPAGRLYE YPTXAKTIRR AESSDSLRSL ASRLELAATA TARRHHS
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKEIELDNEN IYLRTKVAEV ERYQQHHHQM VSGSEINAIE ALASRNYFAH SIMTAGSGSG
201: NGGSYSDPDK KILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.