Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G085450.1 | Barley | nucleus | 50.93 | 56.7 |
| Solyc10g017640.1.1 | Tomato | nucleus | 30.56 | 54.1 |
| HORVU3Hr1G095080.3 | Barley | plastid | 47.22 | 43.97 |
| HORVU6Hr1G002270.1 | Barley | mitochondrion, nucleus | 39.81 | 40.19 |
| KRH48297 | Soybean | nucleus | 32.41 | 39.33 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 44.44 | 38.1 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 47.22 | 32.08 |
| HORVU3Hr1G095200.4 | Barley | nucleus | 47.22 | 30.54 |
| HORVU7Hr1G054390.1 | Barley | nucleus | 42.59 | 29.87 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 34.26 | 24.03 |
| HORVU7Hr1G054320.2 | Barley | nucleus | 42.59 | 23.71 |
| HORVU6Hr1G002330.14 | Barley | nucleus | 32.41 | 18.23 |
| KRH40554 | Soybean | nucleus | 35.19 | 18.01 |
| KRH00625 | Soybean | nucleus | 34.26 | 17.7 |
| Bra000393.1-P | Field mustard | nucleus | 32.41 | 16.43 |
| CDY60689 | Canola | nucleus | 32.41 | 16.43 |
| Bra039324.1-P | Field mustard | nucleus | 32.41 | 16.43 |
| CDY27368 | Canola | nucleus | 32.41 | 16.43 |
| CDY37054 | Canola | nucleus | 32.41 | 16.43 |
| CDY53886 | Canola | nucleus | 32.41 | 16.43 |
| AT2G45660.1 | Thale cress | nucleus | 32.41 | 16.36 |
| PGSC0003DMT400000028 | Potato | nucleus | 33.33 | 16.07 |
| CDX74755 | Canola | nucleus | 31.48 | 15.96 |
| Bra004928.1-P | Field mustard | nucleus | 31.48 | 15.96 |
| CDY69077 | Canola | nucleus | 31.48 | 15.96 |
| PGSC0003DMT400026576 | Potato | nucleus | 31.48 | 15.89 |
| HORVU3Hr1G095090.1 | Barley | cytosol, mitochondrion, nucleus | 46.3 | 14.84 |
| KRH65189 | Soybean | nucleus | 32.41 | 14.77 |
| KRH48299 | Soybean | nucleus | 0.93 | 0.73 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287PYG0 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:HORVU4Hr1G085370 | EnsemblPlants:HORVU4Hr1G085370.1 | InterPro:IPR002100 |
| InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF213 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B463EE0 | SEG:seg |
Description
No Description!
Coordinates
chrchr4H:-:631627951..631628418
Molecular Weight (calculated)
7154.8 Da
IEP (calculated)
9.765
GRAVY (calculated)
-0.110
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRGAVELR RIEDRTSRQV RFCKRRSCLF KKAYELGLLC DAEVALLVFS PAGRLYEYSI SNXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXX
101: XXXXXXXX
001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.