Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G322700.2 | Wheat | nucleus | 95.44 | 95.44 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 94.61 | 94.61 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 94.19 | 94.19 |
| Os02t0731200-01 | Rice | nucleus | 80.5 | 80.5 |
| OQU85464 | Sorghum | nucleus | 75.93 | 75.62 |
| Zm00001d017932_P002 | Maize | nucleus | 70.54 | 72.03 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 65.15 | 64.34 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 60.17 | 61.7 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 58.09 | 59.32 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 59.34 | 58.37 |
| CDX75412 | Canola | nucleus | 54.77 | 55.0 |
| CDX69036 | Canola | nucleus | 54.36 | 54.58 |
| Bra017638.1-P | Field mustard | nucleus | 53.94 | 54.17 |
| CDX72465 | Canola | nucleus | 53.94 | 54.17 |
| CDY49287 | Canola | nucleus | 53.94 | 54.17 |
| AT3G57230.1 | Thale cress | nucleus | 53.53 | 53.75 |
| HORVU5Hr1G000370.3 | Barley | nucleus | 45.64 | 53.14 |
| HORVU7Hr1G023940.2 | Barley | nucleus | 48.55 | 50.87 |
| KRH42047 | Soybean | nucleus | 49.38 | 49.38 |
| HORVU2Hr1G080490.1 | Barley | nucleus, plastid | 62.24 | 49.02 |
| HORVU5Hr1G000480.1 | Barley | nucleus | 38.59 | 48.95 |
| HORVU1Hr1G008290.4 | Barley | nucleus | 44.4 | 44.58 |
| Bra011509.1-P | Field mustard | nucleus | 51.45 | 42.76 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 25.73 | 41.89 |
| HORVU7Hr1G024000.2 | Barley | nucleus | 44.81 | 40.45 |
| HORVU1Hr1G008300.3 | Barley | nucleus | 47.3 | 40.14 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 35.68 | 34.13 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 36.93 | 32.84 |
| HORVU5Hr1G095710.1 | Barley | nucleus | 31.54 | 32.07 |
| HORVU5Hr1G076400.1 | Barley | nucleus | 32.37 | 30.95 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 33.61 | 30.34 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 33.61 | 30.22 |
| HORVU7Hr1G054220.3 | Barley | nucleus | 30.29 | 28.52 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 35.68 | 28.01 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 35.27 | 27.78 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 37.34 | 27.61 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 31.54 | 27.54 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 30.29 | 25.7 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287UNF4 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| EnsemblPlantsGene:HORVU6Hr1G073040 | EnsemblPlants:HORVU6Hr1G073040.2 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000B46DFFD | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:507069041..507077811
Molecular Weight (calculated)
27068.4 Da
IEP (calculated)
9.546
GRAVY (calculated)
-0.632
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIRR IDNSTNRQVT FSKRRGGLLK KAKELSILCD AEVGLVVFSS TGRLHEFSST SMKAVIDRYT KAKEEQPGVN ATSEIKLWQR EAASLRQQLH
101: DLQESHKQLM GEELSGLGVR DLQGLENRLE MSLRSIKARK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKMELS IKLQSFEAGG ATDPNKSSST
201: PYSFRIVQDE NIPANLELSQ AEQNEQAHCK TGAPALGLQL S
101: DLQESHKQLM GEELSGLGVR DLQGLENRLE MSLRSIKARK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKMELS IKLQSFEAGG ATDPNKSSST
201: PYSFRIVQDE NIPANLELSQ AEQNEQAHCK TGAPALGLQL S
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.