Factsheet for Bra017638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra003919.1-P
Bra004007.1-P
Bra004071.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra007138.1-P
Bra007139.1-P
Bra007972.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra013364.1-P
Bra015129.1-P
Bra016128.1-P
Bra016129.1-P
Bra017638.1-P
Bra018741.1-P
Bra018767.1-P
Bra019221.1-P
Bra020923.1-P
Bra021470.1-P
Bra028019.1-P
Bra028020.1-P
Bra029424.1-P
Bra038326.1-P
Bra039170.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57230.1	Bra004007.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra004361.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra038326.1-P	AT1G69120.1	15805477
AT3G57230.1	Bra003919.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra007972.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra016128.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra016129.1-P	AT1G71692.1	15805477
AT3G57230.1	Bra000392.1-P	AT2G45650.1	15805477
AT3G57230.1	Bra004927.1-P	AT2G45650.1	15805477
AT3G57230.1	Bra000393.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra004928.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra039324.1-P	AT2G45660.1	15805477
AT3G57230.1	Bra021470.1-P	AT3G02310.1	15805477
AT3G57230.1	Bra039170.1-P	AT3G02310.1	15805477
AT3G57230.1	Bra011509.1-P	AT3G57230.1	15805477
AT3G57230.1	Bra017638.1-P	AT3G57230.1	15805477
AT3G57230.1	Bra029424.1-P	AT4G11880.1	15805477
AT3G57230.1	Bra012564.1-P	AT4G18960.1	15805477
AT3G57230.1	Bra013364.1-P	AT4G18960.1	15805477
AT3G57230.1	Bra019221.1-P	AT4G24540.1	15805477
AT3G57230.1	Bra010623.1-P	AT4G37940.1	15805477
AT3G57230.1	Bra011797.1-P	AT4G37940.1	15805477
AT3G57230.1	Bra004071.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra007138.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra007139.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra015129.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra018741.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra018767.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra020923.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra028019.1-P	AT5G27070.1	15805477
AT3G57230.1	Bra028020.1-P	AT5G27070.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49287	Canola	nucleus	100.0	100.0
AT3G57230.1	Thale cress	nucleus	86.67	86.67
Zm00001d003409_P001	Maize	nucleus	25.83	71.26
Bra011509.1-P	Field mustard	nucleus	81.25	67.24
Os08t0431900-00	Rice	nucleus	43.75	66.04
GSMUA_Achr3P07310_001	Banana	nucleus	65.0	63.93
Bra010623.1-P	Field mustard	nucleus	55.83	62.62
Os06t0347700-00	Rice	nucleus	37.5	61.22
Bra011797.1-P	Field mustard	nucleus	57.92	60.96
TraesCS7D01G107200.1	Wheat	nucleus	24.58	60.82
Bra030222.1-P	Field mustard	nucleus	57.5	60.79
Bra039921.1-P	Field mustard	nucleus	57.08	60.35
GSMUA_Achr7P12610_001	Banana	nucleus	58.75	60.0
TraesCSU01G209900.1	Wheat	nucleus	24.17	59.79
Os02t0579600-00	Rice	nucleus	59.58	59.58
TraesCS2D01G325000.1	Wheat	nucleus	58.75	58.75
TraesCS2A01G337900.1	Wheat	nucleus	58.75	58.75
OQU85202	Sorghum	nucleus	58.33	58.33
GSMUA_Achr5P24560_001	Banana	nucleus	57.08	58.05
TraesCS2B01G344000.1	Wheat	nucleus	57.5	57.5
GSMUA_Achr9P15540_001	Banana	nucleus	58.33	57.14
Zm00001d016957_P003	Maize	nucleus	57.08	57.08
OQU85464	Sorghum	nucleus	57.08	56.61
OQU81712	Sorghum	nucleus	56.25	56.49
Os02t0731200-01	Rice	nucleus	56.25	56.02
Zm00001d017932_P002	Maize	nucleus	54.58	55.51
OQU80503	Sorghum	nucleus	52.92	55.46
Os04t0304400-01	Rice	nucleus	52.08	55.07
TraesCS6B01G322700.2	Wheat	nucleus	55.0	54.77
TraesCS6A01G292300.2	Wheat	nucleus	54.58	54.36
TraesCS6D01G273500.2	Wheat	nucleus	54.58	54.36
HORVU6Hr1G073040.2	Barley	nucleus	54.17	53.94
HORVU5Hr1G000370.3	Barley	nucleus	46.25	53.62
TraesCS1A01G045000.1	Wheat	nucleus	43.75	53.03
TraesCS5B01G002400.1	Wheat	nucleus	49.58	51.29
TraesCS7B01G009800.1	Wheat	nucleus	48.75	50.87
TraesCS7D01G106600.1	Wheat	nucleus	48.75	50.87
TraesCS7A01G111900.1	Wheat	nucleus	48.75	50.87
TraesCS7B01G009500.1	Wheat	nucleus	48.75	50.87
TraesCS5D01G002200.2	Wheat	nucleus	48.75	50.21
TraesCS7A01G111800.1	Wheat	nucleus	47.92	50.0
TraesCS7D01G106900.1	Wheat	nucleus	47.92	50.0
HORVU7Hr1G023940.2	Barley	nucleus	47.5	49.57
KRH42047	Soybean	nucleus	48.75	48.55
TraesCS7A01G111700.1	Wheat	nucleus	47.92	48.32
TraesCS1D01G045700.1	Wheat	nucleus	47.5	48.31
TraesCS1B01G058300.1	Wheat	nucleus	46.67	47.46
TraesCS1B01G058100.1	Wheat	nucleus	47.5	46.91
TraesCS1A01G044900.1	Wheat	nucleus	46.67	46.09
HORVU2Hr1G080490.1	Barley	nucleus, plastid	58.75	46.08
TraesCS1D01G045500.1	Wheat	nucleus	46.25	45.68
TraesCS1B01G058200.1	Wheat	nucleus	41.67	44.84
Solyc01g106170.2.1	Tomato	mitochondrion	27.5	44.59
TraesCS1D01G045600.1	Wheat	nucleus	42.92	44.02
HORVU7Hr1G024000.2	Barley	nucleus	48.33	43.45
Bra040719.1-P	Field mustard	nucleus	30.42	42.94
HORVU1Hr1G008290.4	Barley	nucleus	42.5	42.5
Zm00001d050897_P002	Maize	nucleus	54.17	41.14
HORVU1Hr1G008300.3	Barley	nucleus	47.92	40.49
Bra025411.1-P	Field mustard	nucleus	28.33	38.64
Bra000696.1-P	Field mustard	nucleus	34.17	35.5
Bra004361.1-P	Field mustard	nucleus	27.92	35.45
Bra037895.1-P	Field mustard	nucleus	33.75	35.22
Bra007419.1-P	Field mustard	nucleus	35.42	34.69
Bra004716.1-P	Field mustard	nucleus	33.75	33.2
Bra012564.1-P	Field mustard	nucleus	34.58	33.07
Bra013364.1-P	Field mustard	nucleus	34.17	32.54
Bra014552.1-P	Field mustard	nucleus	33.33	32.26
Bra029347.1-P	Field mustard	nucleus	32.08	32.08
Bra021470.1-P	Field mustard	nucleus	33.33	31.75
Bra012997.1-P	Field mustard	nucleus	31.67	31.54
Bra035952.1-P	Field mustard	nucleus	31.67	31.54
Bra006322.1-P	Field mustard	nucleus	32.5	31.2
Bra039170.1-P	Field mustard	nucleus	32.5	31.2
Bra008674.1-P	Field mustard	nucleus	32.5	30.95
Bra014454.1-P	Field mustard	nucleus	29.17	30.43
Bra011021.1-P	Field mustard	nucleus	32.08	30.32
Bra030032.1-P	Field mustard	nucleus	31.67	30.16
Bra004927.1-P	Field mustard	nucleus	30.0	29.75
Bra032814.1-P	Field mustard	nucleus	31.25	29.64
Bra010955.1-P	Field mustard	nucleus	30.0	29.51
Bra036201.1-P	Field mustard	nucleus	30.0	29.03
Bra003356.1-P	Field mustard	nucleus	32.92	28.94
Bra000392.1-P	Field mustard	nucleus	30.83	28.79
Bra025126.1-P	Field mustard	nucleus	30.42	28.4
Bra038326.1-P	Field mustard	nucleus	30.0	28.12
Bra026543.1-P	Field mustard	nucleus	30.42	27.14
Bra004007.1-P	Field mustard	nucleus	28.33	25.09
Bra017376.1-P	Field mustard	nucleus	25.0	24.69

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra017638	EnsemblPlants:Bra017638.1	EnsemblPlants:Bra017638.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DMA6
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025411FD	:	:	:

Description

AT3G57230 (E=2e-111) AGL16 | AGL16 (AGAMOUS-LIKE 16); transcription factor

Coordinates

chrA03:-:29473360..29476439

Molecular Weight (calculated)

27508.0 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.651

Length

240 amino acids

Sequence
(BLAST)

001: MGRGKIAIKR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYR DAKCDTNSEM NPASELKFWQ NEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EDLQKLENQL EMSLRDVRMK KEQMLVEEIK ELNREGNLVH QENLELHKKV NLMHQQHMEL HKKVSEVESV KSADKISLLT
201: NGLDMGGNSS EHVHLQLSQP QQHDETSSKA IQLSYFSFIA

Best Arabidopsis Sequence Match ( AT3G57230.4 )
(BLAST)

001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA

Arabidopsis Description

AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.