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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra000392.1-P
Bra002368.1-P
Bra004927.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra011509.1-P
Bra014217.1-P
Bra017638.1-P
Bra018296.1-P
Bra018727.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G27050.1 Bra000214.1-P AT2G41090.1 17360592
AT5G27050.1 Bra018296.1-P AT3G51920.1 17360592
AT5G27050.1 Bra033467.1-P AT3G51920.1 17360592
AT5G27050.1 Bra002368.1-P AT5G21274.1 17360592
AT5G27050.1 Bra006595.1-P AT5G21274.1 17360592
AT5G27070.1 Bra009436.1-P AT1G46408.1 15805477
AT5G27070.1 Bra000214.1-P AT2G41090.1 17360592
AT5G27070.1 Bra000214.1-P AT2G41100.1 17360592
AT5G27070.1 Bra000392.1-P AT2G45650.1 15805477
AT5G27070.1 Bra004927.1-P AT2G45650.1 15805477
AT5G27070.1 Bra018296.1-P AT3G51920.1 17360592
AT5G27070.1 Bra033467.1-P AT3G51920.1 17360592
AT5G27070.1 Bra011509.1-P AT3G57230.1 15805477
AT5G27070.1 Bra017638.1-P AT3G57230.1 15805477
AT5G27070.1 Bra039723.1-P AT4G14640.1 17360592
AT5G27070.1 Bra002368.1-P AT5G21274.1 17360592
AT5G27070.1 Bra006595.1-P AT5G21274.1 17360592
AT5G27070.1 Bra010027.1-P AT5G38620.1 15805477
AT5G27070.1 Bra014217.1-P AT5G38620.1 15805477
AT5G27070.1 Bra018727.1-P AT5G38620.1 15805477
AT5G27070.1 Bra032767.1-P AT5G38620.1 15805477
AT5G27070.1 Bra033492.1-P AT5G38620.1 15805477
AT5G27070.1 Bra037434.1-P AT5G38620.1 15805477
AT5G27070.1 Bra010027.1-P AT5G49420.1 15805477
AT5G27070.1 Bra014217.1-P AT5G49420.1 15805477
AT5G27070.1 Bra018727.1-P AT5G49420.1 15805477
AT5G27070.1 Bra032767.1-P AT5G49420.1 15805477
AT5G27070.1 Bra033492.1-P AT5G49420.1 15805477
AT5G27070.1 Bra037434.1-P AT5G49420.1 15805477
AT5G27070.1 Bra010027.1-P AT5G49490.1 15805477
AT5G27070.1 Bra014217.1-P AT5G49490.1 15805477
AT5G27070.1 Bra018727.1-P AT5G49490.1 15805477
AT5G27070.1 Bra032767.1-P AT5G49490.1 15805477
AT5G27070.1 Bra033492.1-P AT5G49490.1 15805477
AT5G27070.1 Bra037434.1-P AT5G49490.1 15805477
AT5G27090.1 Bra010027.1-P AT5G49490.1 15805477
AT5G27090.1 Bra014217.1-P AT5G49490.1 15805477
AT5G27090.1 Bra018727.1-P AT5G49490.1 15805477
AT5G27090.1 Bra032767.1-P AT5G49490.1 15805477
AT5G27090.1 Bra033492.1-P AT5G49490.1 15805477
AT5G27090.1 Bra037434.1-P AT5G49490.1 15805477
AT5G27580.1 Bra009436.1-P AT1G46408.1 15805477
AT5G27580.1 Bra010027.1-P AT5G38620.1 15805477
AT5G27580.1 Bra014217.1-P AT5G38620.1 15805477
AT5G27580.1 Bra018727.1-P AT5G38620.1 15805477
AT5G27580.1 Bra032767.1-P AT5G38620.1 15805477
AT5G27580.1 Bra033492.1-P AT5G38620.1 15805477
AT5G27580.1 Bra037434.1-P AT5G38620.1 15805477
AT5G27580.1 Bra010027.1-P AT5G49420.1 15805477
AT5G27580.1 Bra014217.1-P AT5G49420.1 15805477
AT5G27580.1 Bra018727.1-P AT5G49420.1 15805477
AT5G27580.1 Bra032767.1-P AT5G49420.1 15805477
AT5G27580.1 Bra033492.1-P AT5G49420.1 15805477
AT5G27580.1 Bra037434.1-P AT5G49420.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73406 Canola plastid 89.41 53.9
Bra028019.1-P Field mustard nucleus 89.41 53.33
Bra028020.1-P Field mustard nucleus 44.71 28.9
Bra007138.1-P Field mustard nucleus 40.59 24.56
AT5G27944.1 Thale cress nucleus 17.65 13.39
Bra015129.1-P Field mustard nucleus 24.12 12.85
AT5G27070.1 Thale cress nucleus 21.18 12.54
AT5G26950.1 Thale cress nucleus 21.18 12.46
Bra018767.1-P Field mustard nucleus 22.35 12.42
Bra018741.1-P Field mustard nucleus 18.24 11.74
AT5G27580.1 Thale cress nucleus 15.29 11.66
Bra004071.1-P Field mustard nucleus 18.82 11.27
AT5G26865.1 Thale cress nucleus 8.24 11.11
AT5G27090.1 Thale cress nucleus, plastid 10.59 9.63
AT5G27050.1 Thale cress nucleus 6.47 9.17
Bra022341.1-P Field mustard plastid 18.82 8.7
Bra020923.1-P Field mustard nucleus 10.59 8.61
Bra037571.1-P Field mustard mitochondrion, nucleus, plastid 14.12 7.02
Bra031864.1-P Field mustard nucleus 10.59 5.44
Bra025619.1-P Field mustard nucleus 11.18 5.18
Bra025607.1-P Field mustard nucleus 10.59 5.16
Bra025609.1-P Field mustard nucleus 10.0 5.06
Protein Annotations
EnsemblPlants:Bra007139.1EnsemblPlants:Bra007139.1-PEnsemblPlantsGene:Bra007139SEG:segUniParc:UPI0002542A1EUniProt:M4CSE7
MapMan:35.2:::::
Description
No Description!
Coordinates
chrA09:+:27518119..27518631
Molecular Weight (calculated)
19274.0 Da
IEP (calculated)
4.491
GRAVY (calculated)
-0.754
Length
170 amino acids
Sequence
(BLAST)
001: MHDEKKRFPI KFSQKVQELE GSLVGKLQLL QDILLREDQS IMSEQNHNFP NYSSVPDDQQ QSESATSTEQ DMSRGDVYNS AAATDQSKYS IFLFNHENAS
101: FTQLPHSLSS SLHQTYYNNL SDNRALLGGQ GFNFGFGNNN VTTALPEEQV NFGYYNNSLN FGYDFNNLCT
Best Arabidopsis Sequence Match ( AT5G26950.1 )
(BLAST)
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
Arabidopsis Description
AGL93Agamous-like MADS-box protein AGL93 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9H9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.