Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27050.1 | Thale cress | nucleus | 72.22 | 75.83 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 78.57 | 52.94 |
| AT5G27580.1 | Thale cress | nucleus | 82.54 | 46.64 |
| AT5G27944.1 | Thale cress | nucleus | 81.75 | 45.98 |
| AT5G27070.1 | Thale cress | nucleus | 79.37 | 34.84 |
| AT5G26950.1 | Thale cress | nucleus | 78.57 | 34.26 |
| CDY63012 | Canola | cytosol | 41.27 | 26.0 |
| Bra020923.1-P | Field mustard | nucleus | 42.06 | 25.36 |
| CDY63010 | Canola | plastid | 11.9 | 24.19 |
| Bra018741.1-P | Field mustard | nucleus | 42.06 | 20.08 |
| CDX73406 | Canola | plastid | 44.44 | 19.86 |
| Bra004071.1-P | Field mustard | nucleus | 44.44 | 19.72 |
| Bra007138.1-P | Field mustard | nucleus | 43.65 | 19.57 |
| CDX93744 | Canola | nucleus | 43.65 | 19.3 |
| Bra028019.1-P | Field mustard | nucleus | 43.65 | 19.3 |
| AT4G02235.1 | Thale cress | nucleus | 29.37 | 18.88 |
| CDX93708 | Canola | nucleus | 41.27 | 18.84 |
| CDX93682 | Canola | nucleus | 34.92 | 18.18 |
| CDX73409 | Canola | nucleus | 32.54 | 17.83 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 44.44 | 16.97 |
| Bra015129.1-P | Field mustard | nucleus | 42.86 | 16.93 |
| CDY27890 | Canola | nucleus | 42.86 | 16.93 |
| Bra018767.1-P | Field mustard | nucleus | 40.48 | 16.67 |
| AT5G40220.1 | Thale cress | nucleus | 42.86 | 16.67 |
| CDY28851 | Canola | nucleus | 37.3 | 16.55 |
| AT5G39810.1 | Thale cress | plastid | 40.48 | 15.5 |
| CDX93743 | Canola | nucleus | 31.75 | 15.21 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 40.48 | 15.0 |
| AT5G65330.1 | Thale cress | nucleus | 40.48 | 14.96 |
| AT5G39750.1 | Thale cress | nucleus | 42.06 | 14.93 |
| Bra028020.1-P | Field mustard | nucleus | 30.95 | 14.83 |
| AT4G11250.1 | Thale cress | nucleus | 38.1 | 14.59 |
| CDY40199 | Canola | nucleus | 30.16 | 14.56 |
| CDY56522 | Canola | nucleus | 26.19 | 14.16 |
| AT5G40120.1 | Thale cress | nucleus | 42.06 | 13.77 |
| AT5G37415.1 | Thale cress | nucleus | 34.13 | 13.61 |
| CDY67867 | Canola | mitochondrion | 44.44 | 13.27 |
| AT3G18650.1 | Thale cress | plastid | 38.89 | 12.69 |
| AT5G38740.1 | Thale cress | nucleus | 42.06 | 12.44 |
| Bra007139.1-P | Field mustard | nucleus | 11.11 | 8.24 |
| CDY18533 | Canola | nucleus | 3.97 | 6.85 |
Protein Annotations
| MapMan:15.5.14 | EntrezGene:28721199 | Gene3D:3.40.1810.10 | ProteinID:AAB61062.1 | ProteinID:ANM70695.1 | ArrayExpress:AT5G26865 |
| EnsemblPlantsGene:AT5G26865 | EnsemblPlants:AT5G26865.1 | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_001332282.1 | UniProt:O04632 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00000A60A0 | SEG:seg | : | : | : |
Description
AGAMOUS-like MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O04632]
Coordinates
chr5:-:9457264..9457879
Molecular Weight (calculated)
14898.2 Da
IEP (calculated)
9.238
GRAVY (calculated)
-0.706
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MREDTMFKKA LELSTLCDIE VCVILYSRDG ELIKTWPEDQ SKVRDMAERF SKLHERERRK KRTNLSLFLR KKILDNSKLS EKVLEMKDSL ESGLRVLQDK
101: LLLLQPEKNQ TELGQIPVIN NGQNHW
101: LLLLQPEKNQ TELGQIPVIN NGQNHW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.