Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G65330.1 | Thale cress | nucleus | 72.34 | 69.79 |
| AT4G02235.1 | Thale cress | nucleus | 35.26 | 59.18 |
| Bra031864.1-P | Field mustard | nucleus | 40.43 | 40.18 |
| AT5G39750.1 | Thale cress | nucleus | 42.86 | 39.72 |
| AT5G27050.1 | Thale cress | nucleus | 14.29 | 39.17 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 39.21 | 39.09 |
| CDY37821 | Canola | nucleus | 32.52 | 38.77 |
| AT5G39810.1 | Thale cress | plastid | 38.6 | 38.6 |
| AT5G40220.1 | Thale cress | nucleus | 37.99 | 38.58 |
| AT5G26865.1 | Thale cress | nucleus | 14.59 | 38.1 |
| CDY33964 | Canola | nucleus | 33.13 | 37.72 |
| AT5G37415.1 | Thale cress | nucleus | 33.43 | 34.81 |
| AT5G40120.1 | Thale cress | nucleus | 37.99 | 32.47 |
| AT5G38740.1 | Thale cress | nucleus | 41.03 | 31.69 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 17.33 | 30.48 |
| AT3G18650.1 | Thale cress | plastid | 30.4 | 25.91 |
| AT5G27944.1 | Thale cress | nucleus | 16.72 | 24.55 |
| AT5G27580.1 | Thale cress | nucleus | 16.41 | 24.22 |
| AT5G27070.1 | Thale cress | nucleus | 19.15 | 21.95 |
| AT5G26950.1 | Thale cress | nucleus | 18.84 | 21.45 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:826727 | ProteinID:AEE82989.1 | Symbol:AGL52 | ArrayExpress:AT4G11250 |
| EnsemblPlantsGene:AT4G11250 | RefSeq:AT4G11250 | TAIR:AT4G11250 | RefSeq:AT4G11250-TAIR-G | EnsemblPlants:AT4G11250.1 | TAIR:AT4G11250.1 |
| EMBL:AY141216 | Unigene:At.70331 | ProteinID:CAB51409.1 | ProteinID:CAB81226.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | RefSeq:NP_192864.1 | PFAM:PF00319 | PO:PO:0020090 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | UniProt:Q9SUT6 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00000A1E3A | SEG:seg | : | : | : | : |
Description
AGL52AGAMOUS-like 52 [Source:UniProtKB/TrEMBL;Acc:Q9SUT6]
Coordinates
chr4:+:6849578..6850567
Molecular Weight (calculated)
37836.5 Da
IEP (calculated)
8.372
GRAVY (calculated)
-0.812
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQASSSSSC NPTSLTNRLK TIFKKAEELS ILCAIDVCVI YYGPDGDLRT WPKDRETVKN MALRYKEDRK RKKCLNLHEF LEKEKVKDKD KYKGKTNYVK
101: NPNWYPNFDH YSPQQLSQLI QSLERTLSTL QKRLRIVESQ KKQNTNLVHQ SLTPSYLNQT QHLDPSKFSL YMYNHGDATL SQLPLSASQS NQLINYQMQH
201: GFGQNMCLDN ITNNNNFQHP GVSNTQDYSP LLSANNYGLN NHLMQQQDQL HGFDQNLCMM SEIINNNNGL QHPNLSNTVP HEFPYGNTSF SQDMFSSYDG
301: SSLLQTSSLP PLHNIPNSYC FSDNSRLLC
101: NPNWYPNFDH YSPQQLSQLI QSLERTLSTL QKRLRIVESQ KKQNTNLVHQ SLTPSYLNQT QHLDPSKFSL YMYNHGDATL SQLPLSASQS NQLINYQMQH
201: GFGQNMCLDN ITNNNNFQHP GVSNTQDYSP LLSANNYGLN NHLMQQQDQL HGFDQNLCMM SEIINNNNGL QHPNLSNTVP HEFPYGNTSF SQDMFSSYDG
301: SSLLQTSSLP PLHNIPNSYC FSDNSRLLC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.