Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G41200.1 | Thale cress | nucleus, plastid | 83.33 | 81.82 |
| AT5G39750.1 | Thale cress | nucleus | 65.43 | 59.72 |
| AT5G39810.1 | Thale cress | plastid | 58.02 | 57.14 |
| AT5G40120.1 | Thale cress | nucleus | 65.74 | 55.32 |
| AT5G38740.1 | Thale cress | nucleus | 65.12 | 49.53 |
| AT5G37415.1 | Thale cress | nucleus | 42.59 | 43.67 |
| AT5G27050.1 | Thale cress | nucleus | 16.05 | 43.33 |
| AT5G26865.1 | Thale cress | nucleus | 16.67 | 42.86 |
| AT4G02235.1 | Thale cress | nucleus | 25.62 | 42.35 |
| CDY68883 | Canola | nucleus | 37.65 | 41.08 |
| CDY36817 | Canola | plastid | 36.42 | 40.41 |
| CDY65583 | Canola | plastid | 35.49 | 40.07 |
| CDY36823 | Canola | nucleus | 37.35 | 39.67 |
| CDY44599 | Canola | nucleus | 40.43 | 38.99 |
| AT5G65330.1 | Thale cress | nucleus | 40.74 | 38.71 |
| Bra025609.1-P | Field mustard | nucleus | 39.81 | 38.39 |
| AT4G11250.1 | Thale cress | nucleus | 38.58 | 37.99 |
| CDY44595 | Canola | nucleus | 34.26 | 34.8 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 19.75 | 34.22 |
| Bra025607.1-P | Field mustard | nucleus | 36.11 | 33.52 |
| CDY30838 | Canola | nucleus | 37.04 | 33.52 |
| Bra025619.1-P | Field mustard | nucleus | 36.73 | 32.43 |
| AT5G27580.1 | Thale cress | nucleus | 20.37 | 29.6 |
| AT5G27944.1 | Thale cress | nucleus | 19.44 | 28.12 |
| AT5G27070.1 | Thale cress | nucleus | 20.99 | 23.69 |
| AT5G26950.1 | Thale cress | nucleus | 20.68 | 23.18 |
| AT3G18650.1 | Thale cress | plastid | 27.47 | 23.06 |
| CDY44597 | Canola | nucleus | 14.2 | 19.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:834020 | ProteinID:AED94521.1 | Symbol:AGL43 | ArrayExpress:AT5G40220 |
| EnsemblPlantsGene:AT5G40220 | RefSeq:AT5G40220 | TAIR:AT5G40220 | RefSeq:AT5G40220-TAIR-G | EnsemblPlants:AT5G40220.1 | TAIR:AT5G40220.1 |
| EMBL:AY141223 | Unigene:At.64265 | ProteinID:BAB10903.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_198838.2 | PFAM:PF00319 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | UniProt:Q9FL10 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A14D8 | SEG:seg | : | : |
Description
AGL43AGAMOUS-like 43 [Source:UniProtKB/TrEMBL;Acc:Q9FL10]
Coordinates
chr5:-:16078390..16079364
Molecular Weight (calculated)
37009.5 Da
IEP (calculated)
7.539
GRAVY (calculated)
-0.697
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMRSSLPSS SSAYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPPE REKVRDIALR YSQLNEALRR KKSVNLHGFL NKKKKNKGLK
101: NTDKKRKTSL KKVNVLKYPL ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS QFSLFMYNHG DNTLSQIPVS
201: ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE
301: SVNNPWLNQL MQNELYGYGY ADFC
101: NTDKKRKTSL KKVNVLKYPL ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS QFSLFMYNHG DNTLSQIPVS
201: ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE
301: SVNNPWLNQL MQNELYGYGY ADFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.