Factsheet for Bra025609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra009436.1-P
Bra010027.1-P
Bra014217.1-P
Bra018296.1-P
Bra018727.1-P
Bra020600.1-P
Bra031864.1-P
Bra032347.1-P
Bra032767.1-P
Bra033467.1-P
Bra033492.1-P
Bra037434.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38740.1	Bra032347.1-P	AT1G29962.1	15805477
AT5G38740.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G38740.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G38740.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G38740.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G38740.1	Bra020600.1-P	AT5G27130.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G38740.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G38740.1	Bra031864.1-P	AT5G65330.1	15805477
AT5G39810.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G39810.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G39810.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G39810.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G39810.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G39810.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40120.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G40120.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G40120.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40120.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra006595.1-P	AT5G21274.1	17360592
AT5G40120.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40120.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G40220.1	Bra020600.1-P	AT1G48150.1	15805477
AT5G40220.1	Bra009436.1-P	AT5G04640.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G38620.1	15805477
AT5G40220.1	Bra010027.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra014217.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra018727.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra032767.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra033492.1-P	AT5G49420.1	15805477
AT5G40220.1	Bra037434.1-P	AT5G49420.1	15805477
AT5G41200.1	Bra000214.1-P	AT2G41090.1	17360592
AT5G41200.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G41200.1	Bra002368.1-P	AT5G21274.1	17360592
AT5G41200.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44599	Canola	nucleus	96.73	96.73
Bra025607.1-P	Field mustard	nucleus	63.39	61.03
Bra025619.1-P	Field mustard	nucleus	59.52	54.5
AT5G41200.1	Thale cress	nucleus, plastid	40.77	41.52
AT5G40220.1	Thale cress	nucleus	38.39	39.81
AT5G39750.1	Thale cress	nucleus	39.88	37.75
AT5G40120.1	Thale cress	nucleus	39.88	34.81
AT5G39810.1	Thale cress	plastid	33.33	34.04
AT5G38740.1	Thale cress	nucleus	42.56	33.57
AT5G37415.1	Thale cress	nucleus	30.95	32.91
Bra031864.1-P	Field mustard	nucleus	30.95	31.42
Bra020923.1-P	Field mustard	nucleus	14.29	22.97
Bra022341.1-P	Field mustard	plastid	24.7	22.55
Bra007138.1-P	Field mustard	nucleus	17.56	21.0
Bra028019.1-P	Field mustard	nucleus	16.96	20.0
Bra037571.1-P	Field mustard	mitochondrion, nucleus, plastid	20.24	19.88
Bra018741.1-P	Field mustard	nucleus	15.18	19.32
Bra028020.1-P	Field mustard	nucleus	14.88	19.01
Bra004071.1-P	Field mustard	nucleus	15.77	18.66
Bra018767.1-P	Field mustard	nucleus	15.18	16.67
Bra015129.1-P	Field mustard	nucleus	15.18	15.99
Bra007139.1-P	Field mustard	nucleus	5.06	10.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra025609	EnsemblPlants:Bra025609.1	EnsemblPlants:Bra025609.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4EA02	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544D11	SEG:seg

Description

AT5G65330 (E=5e-056) AGL78 | AGL78 (AGAMOUS-LIKE 78); transcription factor

Coordinates

chrA04:-:7503188..7504198

Molecular Weight (calculated)

38322.0 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.667

Length

336 amino acids

Sequence
(BLAST)

001: MRSPRPSSCS KCSSASSSSS SYSRAATSLN SRLLTVFKKA QELTTLCDIE ACVIHYGPDG ELKTWPEDRD KVKDLALRYI QLDKAKRRKK SVNLHEFLNK
101: MEDKKTMLHK FKKRAKKNVE ELKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK NHEVCVNDQN NNFQHLCVSA
201: VQESGGSDYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY SVFPPELQES VSNYAFNQLM QHELFGFDQN MCMGDTTNSF NVVDPCLSDD FCFEFQDPYG
301: ANMVGNPSFS QDFYPDMSSS SVDENRLLQA STLPSL

Best Arabidopsis Sequence Match ( AT5G41200.1 )
(BLAST)

001: MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC

Arabidopsis Description

AGL75Agamous-like MADS-box protein AGL75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.