Factsheet for AT5G38740.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G41200.1	Thale cress	nucleus, plastid	50.7	65.45
AT5G40220.1	Thale cress	nucleus	49.53	65.12
AT5G39750.1	Thale cress	nucleus	51.41	61.69
AT5G39810.1	Thale cress	plastid	44.84	58.05
AT5G40120.1	Thale cress	nucleus	46.95	51.95
AT5G37415.1	Thale cress	nucleus	37.32	50.32
AT5G27050.1	Thale cress	nucleus	12.68	45.0
AT4G02235.1	Thale cress	nucleus	20.19	43.88
CDY65583	Canola	plastid	29.34	43.55
CDY68883	Canola	nucleus	30.05	43.1
Bra025609.1-P	Field mustard	nucleus	33.57	42.56
CDY44599	Canola	nucleus	33.57	42.56
CDY36817	Canola	plastid	29.11	42.47
AT5G26865.1	Thale cress	nucleus	12.44	42.06
AT4G11250.1	Thale cress	nucleus	31.69	41.03
AT5G65330.1	Thale cress	nucleus	32.63	40.76
CDY36823	Canola	nucleus	28.4	39.67
CDY44595	Canola	nucleus	27.93	37.3
AT5G27090.1	Thale cress	nucleus, plastid	15.96	36.36
Bra025607.1-P	Field mustard	nucleus	29.11	35.53
CDY30838	Canola	nucleus	29.34	34.92
AT5G27580.1	Thale cress	nucleus	17.37	33.18
Bra025619.1-P	Field mustard	nucleus	28.4	32.97
AT5G27944.1	Thale cress	nucleus	16.67	31.7
AT5G26950.1	Thale cress	nucleus	18.31	26.99
AT5G27070.1	Thale cress	nucleus	18.08	26.83
AT3G18650.1	Thale cress	plastid	22.3	24.61
CDY44597	Canola	nucleus	11.97	21.52

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:833865	EMBL:AB493770	ProteinID:AED94355.1	Symbol:AGL77
ArrayExpress:AT5G38740	EnsemblPlantsGene:AT5G38740	RefSeq:AT5G38740	TAIR:AT5G38740	RefSeq:AT5G38740-TAIR-G	EnsemblPlants:AT5G38740.1
TAIR:AT5G38740.1	Unigene:At.65602	ProteinID:BAB10132.1	ncoils:Coil	GO:GO:0000982	GO:GO:0000987
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_SRF-like	RefSeq:NP_198690.1	PFAM:PF00319
PO:PO:0020090	PO:PO:0020093	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350	UniProt:Q9FKR2
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000AA8DF	SEG:seg

Description

AGL77AGAMOUS-like 77 [Source:UniProtKB/TrEMBL;Acc:Q9FKR2]

Coordinates

chr5:-:15512943..15514305

Molecular Weight (calculated)

48443.6 Da

IEP (calculated)

8.064

GRAVY (calculated)

-0.739

Length

426 amino acids

Sequence
(BLAST)

001: MTTIRSSPSS SRCSNSSSSS SYSLASTSLS NRLETIFKKA SELCTLCDIE ACVIYYGPDG ELKTWPKERE KVRDIALRFN QLNEALRHKK SVNLHGFLNK
101: KKKNKGLKNP NKKKKTSLKN VNVLKYPLAD HYSPDQVSQL TQSLELNVSK FQERLRFLES QKQNETKPDH QSLTSISSLN QSLNPSQFSL FMYNHGYNTL
201: SQIPVSASNF NQDYISALLE QSELKSQIMK QEVCGYEQNM CMSNHGDATL SQIPFSASNF NQDFSANNNF QHSFVSNTQD YYSVQKSVNN NYGLKNQLMK
301: HDLCGYEHNM CMSNHGDATF SQIPLSASNF NQDFSVSIQE ESGLMQQELC GYDQNQNMSM GDITNNNFQV TCASVLESVN NFGLNQLMHK EFYGCHQNMS
401: MGNINNNSFQ HPWVSNADHT RRYKNL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.