Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G11250.1 | Thale cress | nucleus | 69.79 | 72.34 |
| AT4G02235.1 | Thale cress | nucleus | 35.48 | 61.73 |
| CDY37821 | Canola | nucleus | 38.42 | 47.46 |
| CDY33964 | Canola | nucleus | 39.3 | 46.37 |
| Bra031864.1-P | Field mustard | nucleus | 43.7 | 45.02 |
| AT5G39750.1 | Thale cress | nucleus | 44.28 | 42.54 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 40.47 | 41.82 |
| AT5G39810.1 | Thale cress | plastid | 39.88 | 41.34 |
| AT5G27050.1 | Thale cress | nucleus | 14.37 | 40.83 |
| AT5G40220.1 | Thale cress | nucleus | 38.71 | 40.74 |
| AT5G26865.1 | Thale cress | nucleus | 14.96 | 40.48 |
| AT5G40120.1 | Thale cress | nucleus | 39.59 | 35.06 |
| AT5G37415.1 | Thale cress | nucleus | 31.96 | 34.49 |
| AT5G38740.1 | Thale cress | nucleus | 40.76 | 32.63 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 17.6 | 32.09 |
| AT5G27944.1 | Thale cress | nucleus | 17.6 | 26.79 |
| AT3G18650.1 | Thale cress | plastid | 29.91 | 26.42 |
| AT5G27580.1 | Thale cress | nucleus | 17.01 | 26.01 |
| AT5G27070.1 | Thale cress | nucleus | 19.35 | 23.0 |
| AT5G26950.1 | Thale cress | nucleus | 18.48 | 21.8 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:836658 | ProteinID:AED98040.1 | Symbol:AGL78 | ArrayExpress:AT5G65330 |
| EnsemblPlantsGene:AT5G65330 | RefSeq:AT5G65330 | TAIR:AT5G65330 | RefSeq:AT5G65330-TAIR-G | EnsemblPlants:AT5G65330.1 | TAIR:AT5G65330.1 |
| EMBL:AY141224 | Unigene:At.28914 | ProteinID:BAB11555.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| RefSeq:NP_201336.1 | PFAM:PF00319 | PO:PO:0000084 | PO:PO:0020090 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | UniProt:Q9FKQ5 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00000A9FD1 | SEG:seg | : | : | : | : |
Description
AGL78AGAMOUS-like 78 [Source:UniProtKB/TrEMBL;Acc:Q9FKQ5]
Coordinates
chr5:+:26110326..26111403
Molecular Weight (calculated)
38891.6 Da
IEP (calculated)
8.227
GRAVY (calculated)
-0.755
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
101: PNFDHYSPQQ LSQLIQSLER TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL SAPHSNQLIN YQNHLMQHGF
201: GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN
301: ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.