Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39810.1 | Thale cress | plastid | 84.23 | 90.88 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 61.69 | 66.36 |
| AT5G40220.1 | Thale cress | nucleus | 59.72 | 65.43 |
| AT5G37415.1 | Thale cress | nucleus | 49.01 | 55.06 |
| AT5G40120.1 | Thale cress | nucleus | 58.31 | 53.77 |
| AT5G38740.1 | Thale cress | nucleus | 61.69 | 51.41 |
| AT5G65330.1 | Thale cress | nucleus | 42.54 | 44.28 |
| AT4G02235.1 | Thale cress | nucleus | 24.23 | 43.88 |
| AT4G11250.1 | Thale cress | nucleus | 39.72 | 42.86 |
| CDY68883 | Canola | nucleus | 35.77 | 42.76 |
| CDY65583 | Canola | plastid | 34.08 | 42.16 |
| AT5G26865.1 | Thale cress | nucleus | 14.93 | 42.06 |
| CDY36817 | Canola | plastid | 33.24 | 40.41 |
| CDY36823 | Canola | nucleus | 34.37 | 40.0 |
| Bra025609.1-P | Field mustard | nucleus | 37.75 | 39.88 |
| CDY44599 | Canola | nucleus | 37.75 | 39.88 |
| AT5G27050.1 | Thale cress | nucleus | 12.96 | 38.33 |
| CDY44595 | Canola | nucleus | 33.24 | 36.99 |
| Bra025607.1-P | Field mustard | nucleus | 34.93 | 35.53 |
| CDY30838 | Canola | nucleus | 34.65 | 34.36 |
| Bra025619.1-P | Field mustard | nucleus | 34.65 | 33.52 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 17.18 | 32.62 |
| AT5G27580.1 | Thale cress | nucleus | 18.03 | 28.7 |
| AT5G27944.1 | Thale cress | nucleus | 18.03 | 28.57 |
| AT5G27070.1 | Thale cress | nucleus | 20.28 | 25.09 |
| AT5G26950.1 | Thale cress | nucleus | 19.44 | 23.88 |
| AT3G18650.1 | Thale cress | plastid | 24.79 | 22.8 |
| CDY44597 | Canola | nucleus | 14.37 | 21.52 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:833971 | EntrezGene:833977 | ProteinID:AED94471.1 | ProteinID:AED94478.1 |
| ArrayExpress:AT5G39750 | EnsemblPlantsGene:AT5G39750 | RefSeq:AT5G39750 | TAIR:AT5G39750 | RefSeq:AT5G39750-TAIR-G | EnsemblPlants:AT5G39750.1 |
| TAIR:AT5G39750.1 | EMBL:AY141225 | Unigene:At.30325 | ProteinID:BAB11381.1 | ProteinID:BAB11385.1 | Symbol:EMB3008 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like |
| RefSeq:NP_198791.1 | RefSeq:NP_198797.1 | PFAM:PF00319 | PO:PO:0009089 | PO:PO:0020090 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | UniProt:Q9FIX0 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000009FEFD | SEG:seg | : | : | : |
Description
AGL81Agamous-like MADS-box protein AGL81 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX0]
Coordinates
chr5:+:15906875..15907942
Molecular Weight (calculated)
40180.0 Da
IEP (calculated)
5.994
GRAVY (calculated)
-0.612
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRSLPSSS RCSSSSSSSS YSLASTSLSN RLETIFKKAS ELCTLCDIEA CVIYYGPDGE LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK
101: KDKTNLEKKA KITDNDDLKT CLKNVNILKY PLADHYSPDQ VSQLIQSLEP HVSKVRERIR FVESQKHKET KPDHQSLASS SLNHQTQSLN PSQFSLFMYN
201: HGDNTLSQIP VSASNFNQDY FSALLEQSEL KSQIMKQDLC GYEQNMCMSN HGDATLSQIP LSASNLNQDF SALLQDESGL MQQELCGYDQ NMFMNNNNFQ
301: HSFVSNTQDH SAPVVQESVN NNYGLMPHVP CGYDQNLFTS DITNNNLLIN NSMFL
101: KDKTNLEKKA KITDNDDLKT CLKNVNILKY PLADHYSPDQ VSQLIQSLEP HVSKVRERIR FVESQKHKET KPDHQSLASS SLNHQTQSLN PSQFSLFMYN
201: HGDNTLSQIP VSASNFNQDY FSALLEQSEL KSQIMKQDLC GYEQNMCMSN HGDATLSQIP LSASNLNQDF SALLQDESGL MQQELCGYDQ NMFMNNNNFQ
301: HSFVSNTQDH SAPVVQESVN NNYGLMPHVP CGYDQNLFTS DITNNNLLIN NSMFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.