Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68883 | Canola | nucleus | 68.2 | 70.03 |
| CDY65583 | Canola | plastid | 57.7 | 61.32 |
| CDY44599 | Canola | nucleus | 65.57 | 59.52 |
| CDY36817 | Canola | plastid | 55.41 | 57.88 |
| CDY30838 | Canola | nucleus | 65.25 | 55.59 |
| CDY44595 | Canola | nucleus | 56.07 | 53.6 |
| CDY44597 | Canola | nucleus | 30.16 | 38.82 |
| AT5G40220.1 | Thale cress | nucleus | 39.67 | 37.35 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 39.34 | 36.36 |
| AT5G39750.1 | Thale cress | nucleus | 40.0 | 34.37 |
| AT5G40120.1 | Thale cress | nucleus | 40.0 | 31.69 |
| AT5G39810.1 | Thale cress | plastid | 32.46 | 30.09 |
| AT5G37415.1 | Thale cress | nucleus | 30.16 | 29.11 |
| AT5G38740.1 | Thale cress | nucleus | 39.67 | 28.4 |
| CDY37821 | Canola | nucleus | 24.92 | 27.54 |
| CDY33964 | Canola | nucleus | 25.57 | 26.99 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 21.31 | 26.42 |
| CDY63010 | Canola | plastid | 5.25 | 25.81 |
| CDY63012 | Canola | cytosol | 14.1 | 21.5 |
| CDX99332 | Canola | plastid | 24.92 | 21.35 |
| CDX92256 | Canola | plastid | 25.25 | 20.81 |
| CDY18533 | Canola | nucleus | 4.92 | 20.55 |
| CDX95509 | Canola | plastid | 19.34 | 20.42 |
| CDX93682 | Canola | nucleus | 16.07 | 20.25 |
| CDX73406 | Canola | plastid | 17.05 | 18.44 |
| CDX93744 | Canola | nucleus | 17.05 | 18.25 |
| CDX93743 | Canola | nucleus | 15.41 | 17.87 |
| CDY40199 | Canola | nucleus | 14.75 | 17.24 |
| CDX93708 | Canola | nucleus | 15.41 | 17.03 |
| CDX73409 | Canola | nucleus | 12.79 | 16.96 |
| CDY28851 | Canola | nucleus | 15.74 | 16.9 |
| CDY27890 | Canola | nucleus | 16.39 | 15.67 |
| CDY67867 | Canola | mitochondrion | 20.66 | 14.93 |
| CDY56522 | Canola | nucleus | 11.15 | 14.59 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 15.74 | 14.12 |
| CDX75976 | Canola | mitochondrion, nucleus | 6.23 | 9.36 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HIZ9 | UniProt:A0A078HIZ9 | EnsemblPlants:CDY36823 | ProteinID:CDY36823 |
| ProteinID:CDY36823.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00062664001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EB3180 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g32160DBnaC04g32160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIZ9]
Coordinates
chrLK032384:-:80020..80937
Molecular Weight (calculated)
35130.4 Da
IEP (calculated)
6.158
GRAVY (calculated)
-0.663
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPRPSSSS SSYSLAATSL NSRLLTIFKK AQELTTLCDI GACVIHYGPD GELKTWPENR DIVRDLALRY IQLDQAKRRK KSVNLHEFLN KNKDKKTMLN
101: KFKKRNVEEL KYPISDHYSP DQISQLIQSL ELSYSKLQER RRFLAEKANM EDRQPSLNPS HFTKYPEESC VYDQNNFQHL CVSDYSALQE PGLHNYQLMP
201: YVGYYQNMCM GNNFQVPCVS DYSLFPPELQ ETVSNYGMNQ LMQNMCMGDT TNSCNVLHPC LSDDLCFDFQ DPYGGNPSFS QDFPDISSSY VYENTLLQGC
301: TQPSL
101: KFKKRNVEEL KYPISDHYSP DQISQLIQSL ELSYSKLQER RRFLAEKANM EDRQPSLNPS HFTKYPEESC VYDQNNFQHL CVSDYSALQE PGLHNYQLMP
201: YVGYYQNMCM GNNFQVPCVS DYSLFPPELQ ETVSNYGMNQ LMQNMCMGDT TNSCNVLHPC LSDDLCFDFQ DPYGGNPSFS QDFPDISSSY VYENTLLQGC
301: TQPSL
001: MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
101: PNKKMKTSLK NVNILKYPLA DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ FSLFMYNHGD NTLSQIPVSA
201: SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH
301: YSAVEESVKN PWLNQLMQNE LYGYGYAGFC
Arabidopsis Description
AGL75Agamous-like MADS-box protein AGL75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.