Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73409 | Canola | nucleus | 61.69 | 70.0 |
| CDX93743 | Canola | nucleus | 68.97 | 68.44 |
| CDX73406 | Canola | plastid | 51.72 | 47.87 |
| CDX93744 | Canola | nucleus | 49.81 | 45.61 |
| CDY63010 | Canola | plastid | 8.43 | 35.48 |
| CDX93708 | Canola | nucleus | 32.95 | 31.16 |
| AT5G26865.1 | Thale cress | nucleus | 14.56 | 30.16 |
| CDX93682 | Canola | nucleus | 27.59 | 29.75 |
| AT5G27580.1 | Thale cress | nucleus | 24.52 | 28.7 |
| AT5G27944.1 | Thale cress | nucleus | 24.52 | 28.57 |
| AT5G27050.1 | Thale cress | nucleus | 13.03 | 28.33 |
| CDY63012 | Canola | cytosol | 21.46 | 28.0 |
| CDY27890 | Canola | nucleus | 31.8 | 26.02 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 18.01 | 25.13 |
| CDY56522 | Canola | nucleus | 22.22 | 24.89 |
| AT5G27070.1 | Thale cress | nucleus | 26.82 | 24.39 |
| AT5G26950.1 | Thale cress | nucleus | 26.44 | 23.88 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 31.03 | 23.82 |
| CDY28851 | Canola | nucleus | 21.84 | 20.07 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 15.71 | 16.67 |
| CDX95509 | Canola | plastid | 18.39 | 16.61 |
| CDX99332 | Canola | plastid | 21.84 | 16.01 |
| CDY68883 | Canola | nucleus | 18.01 | 15.82 |
| CDY36817 | Canola | plastid | 17.24 | 15.41 |
| CDY44595 | Canola | nucleus | 18.77 | 15.36 |
| CDX92256 | Canola | plastid | 21.46 | 15.14 |
| CDY30838 | Canola | nucleus | 20.69 | 15.08 |
| CDY18533 | Canola | nucleus | 4.21 | 15.07 |
| CDY65583 | Canola | plastid | 16.48 | 14.98 |
| CDY36823 | Canola | nucleus | 17.24 | 14.75 |
| CDY44599 | Canola | nucleus | 16.86 | 13.1 |
| CDY33964 | Canola | nucleus | 13.41 | 12.11 |
| CDY37821 | Canola | nucleus | 12.64 | 11.96 |
| CDY67867 | Canola | mitochondrion | 16.48 | 10.19 |
| CDY44597 | Canola | nucleus | 8.05 | 8.86 |
| CDX75976 | Canola | mitochondrion, nucleus | 6.51 | 8.37 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HSC6 | UniProt:A0A078HSC6 | EnsemblPlants:CDY40199 | ProteinID:CDY40199 |
| ProteinID:CDY40199.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00069341001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF2982 | : | : |
Description
BnaA09g34810DBnaA09g34810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSC6]
Coordinates
chrLK032466:+:6479..7339
Molecular Weight (calculated)
29465.4 Da
IEP (calculated)
6.715
GRAVY (calculated)
-0.691
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSRNKK VKLSVRKQTL FKKSSTNLLM RQETILKKAG ELSTLCGNEI CVIHYDRVGN LVRTWPEDES QFVNKKMHDE KKRSPIEFSQ KVQDLEGSLV
101: YKLQLLRDMM LHDDHHAEPD QSITNLLMNG STSTEQDLSR GDVYNSTATG SLNHPSKYSI FMFNHENATL TQLPHSSLDQ SLIPSCYNNL NDSRTLLGTQ
201: GFNDNSNLST TQGFFNFGYD NNALPGEQVN FGYYNSLLGT QGFGGYNNNL NYTQGFNNLC T
101: YKLQLLRDMM LHDDHHAEPD QSITNLLMNG STSTEQDLSR GDVYNSTATG SLNHPSKYSI FMFNHENATL TQLPHSSLDQ SLIPSCYNNL NDSRTLLGTQ
201: GFNDNSNLST TQGFFNFGYD NNALPGEQVN FGYYNSLLGT QGFGGYNNNL NYTQGFNNLC T
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Arabidopsis Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.