Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015129.1-P | Field mustard | nucleus | 97.49 | 97.49 |
| CDX93708 | Canola | nucleus | 77.12 | 89.13 |
| CDY63010 | Canola | plastid | 15.36 | 79.03 |
| CDY63012 | Canola | cytosol | 47.65 | 76.0 |
| CDX93682 | Canola | nucleus | 49.22 | 64.88 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 55.8 | 52.35 |
| AT5G26865.1 | Thale cress | nucleus | 16.93 | 42.86 |
| AT5G27050.1 | Thale cress | nucleus | 15.36 | 40.83 |
| CDX73406 | Canola | plastid | 31.97 | 36.17 |
| CDX93744 | Canola | nucleus | 30.72 | 34.39 |
| AT5G27944.1 | Thale cress | nucleus | 23.82 | 33.93 |
| CDX93743 | Canola | nucleus | 27.59 | 33.46 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 18.81 | 32.09 |
| CDY40199 | Canola | nucleus | 26.02 | 31.8 |
| AT5G27580.1 | Thale cress | nucleus | 21.94 | 31.39 |
| CDX73409 | Canola | nucleus | 20.69 | 28.7 |
| AT5G27070.1 | Thale cress | nucleus | 25.39 | 28.22 |
| AT5G26950.1 | Thale cress | nucleus | 25.08 | 27.68 |
| CDY56522 | Canola | nucleus | 15.67 | 21.46 |
| CDY28851 | Canola | nucleus | 18.5 | 20.77 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 15.36 | 19.92 |
| CDY18533 | Canola | nucleus | 4.39 | 19.18 |
| CDX99332 | Canola | plastid | 20.38 | 18.26 |
| CDY65583 | Canola | plastid | 15.99 | 17.77 |
| CDX95509 | Canola | plastid | 15.99 | 17.65 |
| CDY36817 | Canola | plastid | 15.67 | 17.12 |
| CDX92256 | Canola | plastid | 19.75 | 17.03 |
| CDY67867 | Canola | mitochondrion | 21.94 | 16.59 |
| CDY36823 | Canola | nucleus | 15.67 | 16.39 |
| CDY68883 | Canola | nucleus | 14.73 | 15.82 |
| CDY44595 | Canola | nucleus | 15.67 | 15.67 |
| CDY30838 | Canola | nucleus | 16.93 | 15.08 |
| CDY44599 | Canola | nucleus | 15.67 | 14.88 |
| CDY37821 | Canola | nucleus | 12.85 | 14.86 |
| CDY33964 | Canola | nucleus | 13.17 | 14.53 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.96 | 9.36 |
| CDY44597 | Canola | nucleus | 5.96 | 8.02 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078GMT1 | UniProt:A0A078GMT1 | EnsemblPlants:CDY27890 | ProteinID:CDY27890 |
| ProteinID:CDY27890.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00038753001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDCB09 |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g04800DBnaA07g04800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMT1]
Coordinates
chrLK032211:+:323307..324266
Molecular Weight (calculated)
36052.9 Da
IEP (calculated)
7.190
GRAVY (calculated)
-0.697
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLSSSTST KMKSNNKLSV RNQTRFKKSF LLLREKTILK KALELSILCD NDICVVHYDR EGNLVNAYPE DQSQVKDILE RYNRLSDREK IKKNTNLSQF
101: YNKKLVDEKR RSLTDAEERK RFTKKVGEFK GSLLDQLLVL QDRARYLLYS QDHQTEPDQS RFIAAMSEQN HNFSAPSSGF FPHNDFSSSL IDEEDPLMSF
201: CPPVINNPVS DHQQQIGSSL TNLLMSGDAS GSSNDRSKFS MFLFNHETAT FTQLPNSVSS SFDQGLTPCS NNLITASHGA QDYNFGYGNS HSSQGFNFGC
301: SNNLNTQGFN FGCNNNLCT
101: YNKKLVDEKR RSLTDAEERK RFTKKVGEFK GSLLDQLLVL QDRARYLLYS QDHQTEPDQS RFIAAMSEQN HNFSAPSSGF FPHNDFSSSL IDEEDPLMSF
201: CPPVINNPVS DHQQQIGSSL TNLLMSGDAS GSSNDRSKFS MFLFNHETAT FTQLPNSVSS SFDQGLTPCS NNLITASHGA QDYNFGYGNS HSSQGFNFGC
301: SNNLNTQGFN FGCNNNLCT
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
101: RTNLSLFLRK KILDDTKLSE KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR TEPLMSGVSN TEQDLSTSSL
201: SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
Arabidopsis Description
AGL93Agamous-like MADS-box protein AGL93 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9H9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.