CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73406
CDX73409
CDX73678
CDX75734
CDX82513
CDX92401
CDX93682
CDX93708
CDX93743
CDX93744
CDX95314
CDY06478
CDY18533
CDY23174
CDY27890
CDY28851
CDY30838
CDY33964
CDY36817
CDY36823
CDY37821
CDY40199
CDY40595
CDY44595
CDY44597
CDY44599
CDY56522
CDY63010
CDY63012
CDY65583
CDY67867
CDY68883

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	CDY33964	AT4G11250.1	15805477
AT5G38620.1	CDY37821	AT4G11250.1	15805477
AT5G38620.1	CDX75734	AT5G26880.1	15805477
AT5G38620.1	CDX82513	AT5G26880.1	15805477
AT5G38620.1	CDX73406	AT5G27070.1	15805477
AT5G38620.1	CDX73409	AT5G27070.1	15805477
AT5G38620.1	CDX93682	AT5G27070.1	15805477
AT5G38620.1	CDX93708	AT5G27070.1	15805477
AT5G38620.1	CDX93743	AT5G27070.1	15805477
AT5G38620.1	CDX93744	AT5G27070.1	15805477
AT5G38620.1	CDY18533	AT5G27070.1	15805477
AT5G38620.1	CDY27890	AT5G27070.1	15805477
AT5G38620.1	CDY28851	AT5G27070.1	15805477
AT5G38620.1	CDY40199	AT5G27070.1	15805477
AT5G38620.1	CDY40595	AT5G27070.1	15805477
AT5G38620.1	CDY56522	AT5G27070.1	15805477
AT5G38620.1	CDY63010	AT5G27070.1	15805477
AT5G38620.1	CDY63012	AT5G27070.1	15805477
AT5G38620.1	CDY67867	AT5G27070.1	15805477
AT5G38620.1	CDX73406	AT5G27580.1	15805477
AT5G38620.1	CDX73409	AT5G27580.1	15805477
AT5G38620.1	CDX93682	AT5G27580.1	15805477
AT5G38620.1	CDX93708	AT5G27580.1	15805477
AT5G38620.1	CDX93743	AT5G27580.1	15805477
AT5G38620.1	CDX93744	AT5G27580.1	15805477
AT5G38620.1	CDY18533	AT5G27580.1	15805477
AT5G38620.1	CDY27890	AT5G27580.1	15805477
AT5G38620.1	CDY28851	AT5G27580.1	15805477
AT5G38620.1	CDY40199	AT5G27580.1	15805477
AT5G38620.1	CDY40595	AT5G27580.1	15805477
AT5G38620.1	CDY56522	AT5G27580.1	15805477
AT5G38620.1	CDY63010	AT5G27580.1	15805477
AT5G38620.1	CDY63012	AT5G27580.1	15805477
AT5G38620.1	CDY67867	AT5G27580.1	15805477
AT5G38620.1	CDY30838	AT5G38740.1	15805477
AT5G38620.1	CDY36817	AT5G38740.1	15805477
AT5G38620.1	CDY36823	AT5G38740.1	15805477
AT5G38620.1	CDY44595	AT5G38740.1	15805477
AT5G38620.1	CDY44597	AT5G38740.1	15805477
AT5G38620.1	CDY44599	AT5G38740.1	15805477
AT5G38620.1	CDY65583	AT5G38740.1	15805477
AT5G38620.1	CDY68883	AT5G38740.1	15805477
AT5G38620.1	CDY30838	AT5G40220.1	15805477
AT5G38620.1	CDY36817	AT5G40220.1	15805477
AT5G38620.1	CDY36823	AT5G40220.1	15805477
AT5G38620.1	CDY44595	AT5G40220.1	15805477
AT5G38620.1	CDY44597	AT5G40220.1	15805477
AT5G38620.1	CDY44599	AT5G40220.1	15805477
AT5G38620.1	CDY65583	AT5G40220.1	15805477
AT5G38620.1	CDY68883	AT5G40220.1	15805477
AT5G38620.1	CDY33964	AT5G65330.1	15805477
AT5G38620.1	CDY37821	AT5G65330.1	15805477
AT5G49420.1	CDY33964	AT4G11250.1	15805477
AT5G49420.1	CDY37821	AT4G11250.1	15805477
AT5G49420.1	CDX75734	AT5G26880.1	15805477
AT5G49420.1	CDX82513	AT5G26880.1	15805477
AT5G49420.1	CDX73406	AT5G27070.1	15805477
AT5G49420.1	CDX73409	AT5G27070.1	15805477
AT5G49420.1	CDX93682	AT5G27070.1	15805477
AT5G49420.1	CDX93708	AT5G27070.1	15805477
AT5G49420.1	CDX93743	AT5G27070.1	15805477
AT5G49420.1	CDX93744	AT5G27070.1	15805477
AT5G49420.1	CDY18533	AT5G27070.1	15805477
AT5G49420.1	CDY27890	AT5G27070.1	15805477
AT5G49420.1	CDY28851	AT5G27070.1	15805477
AT5G49420.1	CDY40199	AT5G27070.1	15805477
AT5G49420.1	CDY40595	AT5G27070.1	15805477
AT5G49420.1	CDY56522	AT5G27070.1	15805477
AT5G49420.1	CDY63010	AT5G27070.1	15805477
AT5G49420.1	CDY63012	AT5G27070.1	15805477
AT5G49420.1	CDY67867	AT5G27070.1	15805477
AT5G49420.1	CDX73406	AT5G27580.1	15805477
AT5G49420.1	CDX73409	AT5G27580.1	15805477
AT5G49420.1	CDX93682	AT5G27580.1	15805477
AT5G49420.1	CDX93708	AT5G27580.1	15805477
AT5G49420.1	CDX93743	AT5G27580.1	15805477
AT5G49420.1	CDX93744	AT5G27580.1	15805477
AT5G49420.1	CDY18533	AT5G27580.1	15805477
AT5G49420.1	CDY27890	AT5G27580.1	15805477
AT5G49420.1	CDY28851	AT5G27580.1	15805477
AT5G49420.1	CDY40199	AT5G27580.1	15805477
AT5G49420.1	CDY40595	AT5G27580.1	15805477
AT5G49420.1	CDY56522	AT5G27580.1	15805477
AT5G49420.1	CDY63010	AT5G27580.1	15805477
AT5G49420.1	CDY63012	AT5G27580.1	15805477
AT5G49420.1	CDY67867	AT5G27580.1	15805477
AT5G49420.1	CDY30838	AT5G38740.1	15805477
AT5G49420.1	CDY36817	AT5G38740.1	15805477
AT5G49420.1	CDY36823	AT5G38740.1	15805477
AT5G49420.1	CDY44595	AT5G38740.1	15805477
AT5G49420.1	CDY44597	AT5G38740.1	15805477
AT5G49420.1	CDY44599	AT5G38740.1	15805477
AT5G49420.1	CDY65583	AT5G38740.1	15805477
AT5G49420.1	CDY68883	AT5G38740.1	15805477
AT5G49420.1	CDY30838	AT5G40120.1	15805477
AT5G49420.1	CDY36817	AT5G40120.1	15805477
AT5G49420.1	CDY36823	AT5G40120.1	15805477
AT5G49420.1	CDY44595	AT5G40120.1	15805477
AT5G49420.1	CDY44597	AT5G40120.1	15805477
AT5G49420.1	CDY44599	AT5G40120.1	15805477
AT5G49420.1	CDY65583	AT5G40120.1	15805477
AT5G49420.1	CDY68883	AT5G40120.1	15805477
AT5G49420.1	CDY30838	AT5G40220.1	15805477
AT5G49420.1	CDY36817	AT5G40220.1	15805477
AT5G49420.1	CDY36823	AT5G40220.1	15805477
AT5G49420.1	CDY44595	AT5G40220.1	15805477
AT5G49420.1	CDY44597	AT5G40220.1	15805477
AT5G49420.1	CDY44599	AT5G40220.1	15805477
AT5G49420.1	CDY65583	AT5G40220.1	15805477
AT5G49420.1	CDY68883	AT5G40220.1	15805477
AT5G49420.1	CDY33964	AT5G65330.1	15805477
AT5G49420.1	CDY37821	AT5G65330.1	15805477
AT5G49490.1	CDX73678	AT3G51920.1	17360592
AT5G49490.1	CDX95314	AT3G51920.1	17360592
AT5G49490.1	CDY23174	AT3G51920.1	17360592
AT5G49490.1	CDY06478	AT4G14640.1	17360592
AT5G49490.1	CDX92401	AT5G21274.1	17360592
AT5G49490.1	CDX73406	AT5G27070.1	15805477
AT5G49490.1	CDX73409	AT5G27070.1	15805477
AT5G49490.1	CDX93682	AT5G27070.1	15805477
AT5G49490.1	CDX93708	AT5G27070.1	15805477
AT5G49490.1	CDX93743	AT5G27070.1	15805477
AT5G49490.1	CDX93744	AT5G27070.1	15805477
AT5G49490.1	CDY18533	AT5G27070.1	15805477
AT5G49490.1	CDY27890	AT5G27070.1	15805477
AT5G49490.1	CDY28851	AT5G27070.1	15805477
AT5G49490.1	CDY40199	AT5G27070.1	15805477
AT5G49490.1	CDY40595	AT5G27070.1	15805477
AT5G49490.1	CDY56522	AT5G27070.1	15805477
AT5G49490.1	CDY63010	AT5G27070.1	15805477
AT5G49490.1	CDY63012	AT5G27070.1	15805477
AT5G49490.1	CDY67867	AT5G27070.1	15805477
AT5G49490.1	CDX73406	AT5G27090.1	15805477
AT5G49490.1	CDX73409	AT5G27090.1	15805477
AT5G49490.1	CDX93682	AT5G27090.1	15805477
AT5G49490.1	CDX93708	AT5G27090.1	15805477
AT5G49490.1	CDX93743	AT5G27090.1	15805477
AT5G49490.1	CDX93744	AT5G27090.1	15805477
AT5G49490.1	CDY18533	AT5G27090.1	15805477
AT5G49490.1	CDY27890	AT5G27090.1	15805477
AT5G49490.1	CDY28851	AT5G27090.1	15805477
AT5G49490.1	CDY40199	AT5G27090.1	15805477
AT5G49490.1	CDY40595	AT5G27090.1	15805477
AT5G49490.1	CDY56522	AT5G27090.1	15805477
AT5G49490.1	CDY63010	AT5G27090.1	15805477
AT5G49490.1	CDY63012	AT5G27090.1	15805477
AT5G49490.1	CDY67867	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50510	Canola	nucleus	80.08	84.28
Bra018727.1-P	Field mustard	nucleus	76.76	75.51
CDY49671	Canola	mitochondrion, nucleus	73.03	74.26
CDY28103	Canola	plastid	68.05	66.4
CDY67845	Canola	nucleus	45.23	40.98
CDY16511	Canola	nucleus	45.64	40.89
CDY12757	Canola	nucleus	26.97	40.62
CDX77232	Canola	nucleus	43.98	39.85
CDY32839	Canola	nucleus	43.98	39.85
CDY16529	Canola	nucleus	45.23	39.49
CDY44873	Canola	nucleus	32.78	39.3
CDX70208	Canola	nucleus	31.95	38.31
CDY54756	Canola	nucleus	29.88	36.36
CDX85418	Canola	nucleus	34.44	31.68
CDX85396	Canola	nucleus	36.93	31.23
CDY12741	Canola	nucleus	34.85	30.55
CDX86226	Canola	nucleus	36.51	29.73
CDY40477	Canola	nucleus	30.29	29.55
CDX86252	Canola	nucleus	36.93	29.28
CDY46277	Canola	nucleus	25.73	27.93
CDY12872	Canola	nucleus	29.88	27.91
AT5G49490.1	Thale cress	nucleus	32.78	27.72
CDY01199	Canola	nucleus	32.37	26.53
AT5G38620.1	Thale cress	nucleus	38.17	26.36
AT5G49420.1	Thale cress	nucleus	35.68	25.75
CDY25046	Canola	nucleus	19.5	17.87
CDY50584	Canola	nucleus	18.67	17.11
CDY12742	Canola	cytosol, mitochondrion, nucleus	0.41	1.85

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078E2F0	EnsemblPlants:CDX93668	ProteinID:CDX93668	ProteinID:CDX93668.1
GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00156356001	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_SRF-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EF0C1A	SEG:seg

Description

BnaA06g03800D

Coordinates

chrLK031876:+:1238002..1238760

Molecular Weight (calculated)

26843.1 Da

IEP (calculated)

4.071

GRAVY (calculated)

-0.588

Length

241 amino acids

Sequence
(BLAST)

001: MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSSNSN ASFFSFGHSS VESVVSAYLA GQRLPPVSSS RDTREDLGFW
101: WDDEKLANSK NPEELLEAME SMKVLMSHLK GLENQTLTTV DEEISPELDE WSEMELTRLL QDCDDDVPPP PPPPPPLFSN TDKEEEDQTV SDNNNNNNSV
201: SSLPEKSLEE VTMDLDFDSI FEGLVPYDEA DLFWSDDLLL I

Best Arabidopsis Sequence Match ( AT5G49420.1 )
(BLAST)

001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.