Factsheet for AT5G49490.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12757	Canola	nucleus	24.21	43.12
CDY32839	Canola	nucleus	35.09	37.59
CDX77232	Canola	nucleus	35.09	37.59
CDY67845	Canola	nucleus	34.74	37.22
AT5G49420.1	Thale cress	nucleus	43.51	37.13
Bra014217.1-P	Field mustard	nucleus	35.44	36.46
AT5G38620.1	Thale cress	nucleus	44.56	36.39
CDY16529	Canola	nucleus	35.09	36.23
CDY16511	Canola	nucleus	34.04	36.06
Bra018727.1-P	Field mustard	nucleus	30.88	35.92
CDX85396	Canola	nucleus	35.09	35.09
AT1G60920.1	Thale cress	nucleus	23.51	35.08
AT1G60880.1	Thale cress	nucleus	24.56	34.83
Bra037434.1-P	Field mustard	nucleus	31.58	34.48
CDY28103	Canola	plastid	29.12	33.6
CDX93668	Canola	nucleus	27.72	32.78
CDY50510	Canola	nucleus	25.26	31.44
CDY49671	Canola	mitochondrion, nucleus	25.26	30.38
CDY12741	Canola	nucleus	28.77	29.82
CDX85418	Canola	nucleus	27.37	29.77
CDY46277	Canola	nucleus	23.16	29.73
CDX86226	Canola	nucleus	29.82	28.72
CDY01199	Canola	nucleus	29.47	28.57
CDX86252	Canola	nucleus	30.18	28.29
AT1G46408.1	Thale cress	nucleus	26.32	28.2
Bra033492.1-P	Field mustard	nucleus	28.42	27.65
Bra010027.1-P	Field mustard	nucleus	30.18	24.93
AT5G04640.1	Thale cress	nucleus	27.72	24.53
Bra032767.1-P	Field mustard	nucleus	24.21	22.33
AT5G27130.1	Thale cress	nucleus	12.63	11.76
AT1G48150.1	Thale cress	nucleus	10.88	9.6
AT1G50780.1	Thale cress	extracellular, vacuole	8.42	7.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:835009	ProteinID:AED95820.1	Symbol:AGL83	ArrayExpress:AT5G49490
EnsemblPlantsGene:AT5G49490	RefSeq:AT5G49490	TAIR:AT5G49490	RefSeq:AT5G49490-TAIR-G	EnsemblPlants:AT5G49490.1	TAIR:AT5G49490.1
Unigene:At.55456	ProteinID:BAB10762.1	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	RefSeq:NP_199760.1	PFAM:PF00319	PO:PO:0020090	PO:PO:0025074
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF277	UniProt:Q9FGZ5	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A2BEA	:	:	:

Description

AGL83AGAMOUS-like 83 [Source:UniProtKB/TrEMBL;Acc:Q9FGZ5]

Coordinates

chr5:+:20075328..20076185

Molecular Weight (calculated)

32427.7 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.528

Length

285 amino acids

Sequence
(BLAST)

001: MRFVPYLYEI ERLWLSLVNY LSPRKNKNRR CGEIDKIRMV KKGGTKRKIA IETIQKSDYL RVTCTKRREG LFSKASQLCL LSDAQIAILA TPPTSESNIS
101: FYSFGHSSVD AVVSSFLSGQ RCVPLQEDTK EMREDVAICL SRTNLGLGFW WNNESLNKSE NPQEISDAIN SMLTLLSNLK ELSGEEALVN DHKDLKKNER
201: SDVVLQHGTQ YETLNPNSNT TTICCVPDEL PANSNEIVGI SPNPLIMLEK KKSQIEEKFE KEWQVSVTRI ENEATSSYAK RRRSI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.