Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70208 | Canola | nucleus | 30.45 | 40.3 |
| CDY44873 | Canola | nucleus | 30.45 | 40.3 |
| AT1G60920.1 | Thale cress | nucleus | 26.69 | 37.17 |
| AT1G60880.1 | Thale cress | nucleus | 27.44 | 36.32 |
| AT5G04640.1 | Thale cress | nucleus | 39.85 | 32.92 |
| Bra009436.1-P | Field mustard | nucleus | 30.83 | 26.8 |
| AT5G49420.1 | Thale cress | nucleus | 33.08 | 26.35 |
| AT5G49490.1 | Thale cress | nucleus | 28.2 | 26.32 |
| AT5G38620.1 | Thale cress | nucleus | 30.45 | 23.21 |
| AT1G48150.1 | Thale cress | nucleus | 15.79 | 13.0 |
| AT5G27130.1 | Thale cress | nucleus | 14.29 | 12.42 |
| AT1G50780.1 | Thale cress | extracellular, vacuole | 10.53 | 8.67 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:841112 | ProteinID:AAG50617.1 | ProteinID:AEE32126.1 | Symbol:AGL97 |
| ArrayExpress:AT1G46408 | EnsemblPlantsGene:AT1G46408 | RefSeq:AT1G46408 | TAIR:AT1G46408 | RefSeq:AT1G46408-TAIR-G | EnsemblPlants:AT1G46408.1 |
| TAIR:AT1G46408.1 | Unigene:At.65984 | ProteinID:BAH30338.1 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | RefSeq:NP_175144.1 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF277 | UniProt:Q9C633 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000009CA78 | SEG:seg | : |
Description
AGL97Agamous-like MADS-box protein AGL97 [Source:UniProtKB/Swiss-Prot;Acc:Q9C633]
Coordinates
chr1:-:17232135..17232951
Molecular Weight (calculated)
29854.4 Da
IEP (calculated)
3.956
GRAVY (calculated)
-0.533
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVKRKIAI EKIQNKNPRA VSFSKRRKGL YSKASELCLL SDAEIAIIAT PVSSNSNAAF YSFGHSSVDN VVAAFLANQR PCDERFWWED ESLLKSENLE
101: ELREAMDSMS TMLRDLKELE KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIFDT VTNSEFLSVN
201: LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIIEY LTSSEALSMN LKMDDV
101: ELREAMDSMS TMLRDLKELE KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIFDT VTNSEFLSVN
201: LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED FDDLDQIIEY LTSSEALSMN LKMDDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.