Factsheet for AT5G38620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G49420.1	Thale cress	nucleus	49.57	51.8
CDY12757	Canola	nucleus	21.78	47.5
Bra037434.1-P	Field mustard	nucleus	34.1	45.59
CDX85396	Canola	nucleus	36.39	44.56
AT5G49490.1	Thale cress	nucleus	36.39	44.56
CDY32839	Canola	nucleus	30.66	40.23
CDX77232	Canola	nucleus	30.66	40.23
CDY28103	Canola	plastid	28.37	40.08
Bra018727.1-P	Field mustard	nucleus	28.08	40.0
CDY16511	Canola	nucleus	30.66	39.78
CDY67845	Canola	nucleus	30.09	39.47
CDY12741	Canola	nucleus	30.95	39.27
Bra014217.1-P	Field mustard	nucleus	30.95	38.99
CDY16529	Canola	nucleus	30.66	38.77
CDX93668	Canola	nucleus	26.36	38.17
CDY50510	Canola	nucleus	24.93	37.99
CDY49671	Canola	mitochondrion, nucleus	25.79	37.97
AT1G60880.1	Thale cress	nucleus	21.2	36.82
CDX86252	Canola	nucleus	31.52	36.18
AT1G60920.1	Thale cress	nucleus	19.48	35.6
CDX86226	Canola	nucleus	29.51	34.8
CDY01199	Canola	nucleus	28.94	34.35
Bra033492.1-P	Field mustard	nucleus	27.51	32.76
Bra010027.1-P	Field mustard	nucleus	32.09	32.46
AT1G46408.1	Thale cress	nucleus	23.21	30.45
CDY46277	Canola	nucleus	19.2	30.18
CDX85418	Canola	nucleus	22.64	30.15
AT5G04640.1	Thale cress	nucleus	26.93	29.19
Bra032767.1-P	Field mustard	nucleus	23.21	26.21
AT5G27130.1	Thale cress	nucleus	11.75	13.4
AT1G48150.1	Thale cress	nucleus	11.75	12.69
AT1G50780.1	Thale cress	extracellular, vacuole	8.88	9.6

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:833852	ProteinID:AED94342.1	ArrayExpress:AT5G38620	EnsemblPlantsGene:AT5G38620
RefSeq:AT5G38620	TAIR:AT5G38620	RefSeq:AT5G38620-TAIR-G	EnsemblPlants:AT5G38620.1	TAIR:AT5G38620.1	EMBL:AY141237
Unigene:At.64261	ProteinID:BAB10152.1	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	RefSeq:NP_198678.1	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF277	UniProt:Q9FFV9	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00000A1126	SEG:seg	:	:	:	:

Description

MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]

Coordinates

chr5:-:15463858..15464907

Molecular Weight (calculated)

38850.9 Da

IEP (calculated)

4.165

GRAVY (calculated)

-0.434

Length

349 amino acids

Sequence
(BLAST)

001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.