Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G48150.1 | Thale cress | nucleus | 67.18 | 67.18 |
| AT5G27130.1 | Thale cress | nucleus | 32.51 | 34.31 |
| Bra020600.1-P | Field mustard | nucleus | 24.46 | 30.04 |
| CDY25046 | Canola | nucleus | 24.46 | 30.04 |
| CDY50584 | Canola | nucleus | 23.22 | 28.52 |
| AT1G60920.1 | Thale cress | nucleus | 8.36 | 14.14 |
| AT1G60880.1 | Thale cress | nucleus | 8.05 | 12.94 |
| AT1G46408.1 | Thale cress | nucleus | 8.67 | 10.53 |
| AT5G04640.1 | Thale cress | nucleus | 10.22 | 10.25 |
| AT5G49420.1 | Thale cress | nucleus | 9.6 | 9.28 |
| AT5G38620.1 | Thale cress | nucleus | 9.6 | 8.88 |
| AT5G49490.1 | Thale cress | nucleus | 7.43 | 8.42 |
Protein Annotations
| InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | MapMan:35.2 | EntrezGene:841500 | ProteinID:AAG50949.1 |
| ProteinID:AEE32590.1 | ArrayExpress:AT1G50780 | EnsemblPlantsGene:AT1G50780 | RefSeq:AT1G50780 | TAIR:AT1G50780 | RefSeq:AT1G50780-TAIR-G |
| EnsemblPlants:AT1G50780.1 | TAIR:AT1G50780.1 | Unigene:At.52117 | InterPro:Beta-grasp_dom_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 |
| GO:GO:0022900 | GO:GO:0051536 | GO:GO:0051537 | InterPro:IPR012675 | RefSeq:NP_175493.1 | ScanProsite:PS00197 |
| UniProt:Q9C6K0 | SUPFAM:SSF54292 | UniParc:UPI00000A5032 | SEG:seg | : | : |
Description
2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K0]
Coordinates
chr1:+:18821267..18823156
Molecular Weight (calculated)
36558.8 Da
IEP (calculated)
4.030
GRAVY (calculated)
-0.576
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRLSLFIM KQTILYLISI PYSDVNNFVG VLRYQTSFKS VKLSCGEGGC GACVVLLSNQ HSRFVTSPDE NSDVVYSFSG YSHASEIVDC YLNGKSPPKT
101: TINPESSKFW WEDPNLYGDC DDLSELRIIE DRLMRTKKHL MDCLEKKEKS YSVSKSDQNP KNNGGSSSSS SSSSSQIASD FGQNPSTSSP FFDHHSYSSL
201: EPSSQVTTCF DQNPIFSVGS ESSSDQFRYL VNEDAGFVDC LFETEEEKNR MIVPQETQTQ PMFSEEDQSF WENLDVDDVF GLFNDDTNLE VPLQDHSSTN
301: EEDEFMIDIS EYLSEEAMEW PMF
101: TINPESSKFW WEDPNLYGDC DDLSELRIIE DRLMRTKKHL MDCLEKKEKS YSVSKSDQNP KNNGGSSSSS SSSSSQIASD FGQNPSTSSP FFDHHSYSSL
201: EPSSQVTTCF DQNPIFSVGS ESSSDQFRYL VNEDAGFVDC LFETEEEKNR MIVPQETQTQ PMFSEEDQSF WENLDVDDVF GLFNDDTNLE VPLQDHSSTN
301: EEDEFMIDIS EYLSEEAMEW PMF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.