Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86226 | Canola | nucleus | 64.12 | 56.76 |
| Bra010027.1-P | Field mustard | nucleus | 67.56 | 51.3 |
| CDX86252 | Canola | nucleus | 55.34 | 47.7 |
| CDY12757 | Canola | nucleus | 28.63 | 46.88 |
| CDX85396 | Canola | nucleus | 49.24 | 45.26 |
| CDX93668 | Canola | nucleus | 31.68 | 34.44 |
| CDY50510 | Canola | nucleus | 29.77 | 34.06 |
| CDY44873 | Canola | nucleus | 25.95 | 33.83 |
| CDY28103 | Canola | plastid | 31.68 | 33.6 |
| CDY67845 | Canola | nucleus | 33.97 | 33.46 |
| CDY54756 | Canola | nucleus | 25.19 | 33.33 |
| CDX70208 | Canola | nucleus | 25.57 | 33.33 |
| CDY49671 | Canola | mitochondrion, nucleus | 30.15 | 33.33 |
| CDX77232 | Canola | nucleus | 32.82 | 32.33 |
| CDY32839 | Canola | nucleus | 32.82 | 32.33 |
| CDY16529 | Canola | nucleus | 33.21 | 31.52 |
| CDY16511 | Canola | nucleus | 32.06 | 31.23 |
| CDY12741 | Canola | nucleus | 30.53 | 29.09 |
| AT5G49490.1 | Thale cress | nucleus | 29.77 | 27.37 |
| CDY01199 | Canola | nucleus | 30.53 | 27.21 |
| CDY40477 | Canola | nucleus | 25.57 | 27.13 |
| CDY12872 | Canola | nucleus | 25.19 | 25.58 |
| CDY46277 | Canola | nucleus | 20.61 | 24.32 |
| AT5G49420.1 | Thale cress | nucleus | 29.77 | 23.35 |
| AT5G38620.1 | Thale cress | nucleus | 30.15 | 22.64 |
| CDY50584 | Canola | nucleus | 18.7 | 18.63 |
| CDY25046 | Canola | nucleus | 17.56 | 17.49 |
| CDY12742 | Canola | cytosol, mitochondrion, nucleus | 3.05 | 14.81 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DDP7 | EnsemblPlants:CDX85418 | ProteinID:CDX85418 | ProteinID:CDX85418.1 |
| GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00143104001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_SRF-like | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE5167 | : | : |
Description
BnaC07g27290D
Coordinates
chrLK031841:-:1723802..1724685
Molecular Weight (calculated)
29044.8 Da
IEP (calculated)
4.246
GRAVY (calculated)
-0.468
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKSGRGGTK RKIDKMEKIP KREYRATTFS KRCSGLHSKA AQLCLLADAQ IAILATPPSS QSNVSFFSFG HSSVDAVVNA YLTGQRLAPV REEPMEEDIG
101: LWWEKESLCE SKDPRELMDA VKAMERMLSK LRSGDFVSDE EDLIKSNVTS EEQDQILAIC DSFCATDKNI NGLSGGLDVY NQEMDIDELI DWTTFESSVF
201: DDGVLDSTQE LAGINSTNFE AAAHDVSTNP NPPIYNYYHE GVEDEALVFQ NKAANDVSEQ SC
101: LWWEKESLCE SKDPRELMDA VKAMERMLSK LRSGDFVSDE EDLIKSNVTS EEQDQILAIC DSFCATDKNI NGLSGGLDVY NQEMDIDELI DWTTFESSVF
201: DDGVLDSTQE LAGINSTNFE AAAHDVSTNP NPPIYNYYHE GVEDEALVFQ NKAANDVSEQ SC
001: MVKGTKRKIA IETIQKRDSL RVTCTKRRKG LYSKASQLCL LSDAQIAILA TPPSSESDVS FYSFGHSSVD AVVSAFLSGK RPVSAPKDNK ETREDVGICL
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
101: TRKNLGLGFW WNDESLVRSE NPQEISEAIG SMWTLLSNLK ELRADEACVN DHKDLKKNEK SDVHGTQDQT LIFQSASAVC CIPENLNDIT QEPNQTLDIQ
201: SSSSAICCVP DKSPEIFNEI TEEQDQILSI CETFCVTDNN NNNNNNAALP EVNLYYNQDM AIDQLIDFNT PFESSIDDWF SDNTTHQETT SASILNDVGV
301: DDQVSVDTNP FSYFQSLEDA DLVFQRCLDG DNLRFSDCFN DFANTIAAV
Arabidopsis Description
MADS-box protein AGL73 [Source:UniProtKB/TrEMBL;Acc:Q9FFV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.