Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020923.1-P | Field mustard | nucleus | 75.5 | 72.25 |
| CDY27890 | Canola | nucleus | 76.0 | 47.65 |
| CDX93682 | Canola | nucleus | 55.0 | 45.45 |
| CDY63010 | Canola | plastid | 14.0 | 45.16 |
| CDX93708 | Canola | nucleus | 58.5 | 42.39 |
| AT5G26865.1 | Thale cress | nucleus | 26.0 | 41.27 |
| AT5G27050.1 | Thale cress | nucleus | 22.5 | 37.5 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 61.0 | 35.88 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 26.0 | 27.81 |
| AT5G27580.1 | Thale cress | nucleus | 27.5 | 24.66 |
| CDX73406 | Canola | plastid | 33.5 | 23.76 |
| AT5G27944.1 | Thale cress | nucleus | 26.5 | 23.66 |
| CDX93744 | Canola | nucleus | 32.5 | 22.81 |
| CDY40199 | Canola | nucleus | 28.0 | 21.46 |
| CDX93743 | Canola | nucleus | 27.0 | 20.53 |
| CDX73409 | Canola | nucleus | 22.0 | 19.13 |
| AT5G27070.1 | Thale cress | nucleus | 27.0 | 18.82 |
| AT5G26950.1 | Thale cress | nucleus | 27.0 | 18.69 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 22.0 | 17.89 |
| CDY28851 | Canola | nucleus | 24.0 | 16.9 |
| CDY65583 | Canola | plastid | 22.5 | 15.68 |
| CDY37821 | Canola | nucleus | 20.5 | 14.86 |
| CDY68883 | Canola | nucleus | 21.5 | 14.48 |
| CDY36817 | Canola | plastid | 21.0 | 14.38 |
| CDY56522 | Canola | nucleus | 16.5 | 14.16 |
| CDY36823 | Canola | nucleus | 21.5 | 14.1 |
| CDY33964 | Canola | nucleus | 20.0 | 13.84 |
| CDY44595 | Canola | nucleus | 22.0 | 13.79 |
| CDY67867 | Canola | mitochondrion | 29.0 | 13.74 |
| CDX95509 | Canola | plastid | 19.5 | 13.49 |
| CDX99332 | Canola | plastid | 24.0 | 13.48 |
| CDY44599 | Canola | nucleus | 22.5 | 13.39 |
| CDY30838 | Canola | nucleus | 22.5 | 12.57 |
| CDX92256 | Canola | plastid | 23.0 | 12.43 |
| CDY18533 | Canola | nucleus | 3.5 | 9.59 |
| CDY44597 | Canola | nucleus | 6.5 | 5.49 |
| CDX75976 | Canola | mitochondrion, nucleus | 4.5 | 4.43 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JAX5 | UniProt:A0A078JAX5 | EnsemblPlants:CDY63012 | ProteinID:CDY63012 |
| ProteinID:CDY63012.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00037853001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EAD4AF | : |
Description
BnaC06g40940DBnaC06g40940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAX5]
Coordinates
chrLK034233:-:10458..11424
Molecular Weight (calculated)
23271.8 Da
IEP (calculated)
7.808
GRAVY (calculated)
-0.664
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFSLLIPKQ TAPKSFLLLR EKTILKKALE LSILCENEIC VIHCDREGNL VNTYPEDQCQ VKDILKRYNR LSDREKIKKN TNLSQFYNKK LVDEKRRALT
101: DAEERKKFTK KVGDFKGSLQ DQFLILQDRA RDLLYSQDHQ TEPDQSRCLA AMSEQNHNFP APSSGFFPHN DFSFSLIDED PLMKFCPPVI DNLVSDINNK
101: DAEERKKFTK KVGDFKGSLQ DQFLILQDRA RDLLYSQDHQ TEPDQSRCLA AMSEQNHNFP APSSGFFPHN DFSFSLIDED PLMKFCPPVI DNLVSDINNK
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
Arabidopsis Description
AGL89AGAMOUS-like 89 [Source:UniProtKB/TrEMBL;Acc:Q7XJL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.