Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93744 | Canola | nucleus | 93.97 | 92.98 |
| Bra007139.1-P | Field mustard | nucleus | 53.9 | 89.41 |
| CDX73409 | Canola | nucleus | 45.74 | 56.09 |
| CDY40199 | Canola | nucleus | 47.87 | 51.72 |
| CDX93743 | Canola | nucleus | 43.97 | 47.15 |
| AT5G26865.1 | Thale cress | nucleus | 19.86 | 44.44 |
| AT5G27050.1 | Thale cress | nucleus | 17.73 | 41.67 |
| AT5G27944.1 | Thale cress | nucleus | 28.72 | 36.16 |
| CDX93708 | Canola | nucleus | 34.4 | 35.14 |
| CDY63010 | Canola | plastid | 7.45 | 33.87 |
| AT5G27580.1 | Thale cress | nucleus | 26.6 | 33.63 |
| CDY63012 | Canola | cytosol | 23.76 | 33.5 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 21.99 | 33.16 |
| CDX93682 | Canola | nucleus | 27.66 | 32.23 |
| CDY27890 | Canola | nucleus | 36.17 | 31.97 |
| AT5G27070.1 | Thale cress | nucleus | 30.5 | 29.97 |
| AT5G26950.1 | Thale cress | nucleus | 29.08 | 28.37 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 32.62 | 27.06 |
| CDY28851 | Canola | nucleus | 23.4 | 23.24 |
| CDY56522 | Canola | nucleus | 19.15 | 23.18 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 19.86 | 22.76 |
| CDX95509 | Canola | plastid | 19.86 | 19.38 |
| CDY68883 | Canola | nucleus | 19.5 | 18.52 |
| CDY44595 | Canola | nucleus | 20.92 | 18.5 |
| CDY65583 | Canola | plastid | 18.79 | 18.47 |
| CDX92256 | Canola | plastid | 24.11 | 18.38 |
| CDY36817 | Canola | plastid | 18.44 | 17.81 |
| CDX99332 | Canola | plastid | 22.34 | 17.7 |
| CDY44599 | Canola | nucleus | 20.57 | 17.26 |
| CDY36823 | Canola | nucleus | 18.44 | 17.05 |
| CDY37821 | Canola | nucleus | 16.31 | 16.67 |
| CDY30838 | Canola | nucleus | 20.92 | 16.48 |
| CDY18533 | Canola | nucleus | 4.26 | 16.44 |
| CDY67867 | Canola | mitochondrion | 24.11 | 16.11 |
| CDY33964 | Canola | nucleus | 15.96 | 15.57 |
| CDX75976 | Canola | mitochondrion, nucleus | 7.09 | 9.85 |
| CDY44597 | Canola | nucleus | 7.45 | 8.86 |
Protein Annotations
| EnsemblPlants:CDX73406 | EnsemblPlantsGene:GSBRNA2T00108890001 | Gene3D:3.40.1810.10 | GO:A0A078C8K4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | PFAM:PF00319 | ProteinID:CDX73406 |
| ProteinID:CDX73406.1 | SEG:seg | SUPFAM:SSF55455 | UniParc:UPI0004EDC869 | MapMan:15.5.14 | : |
Description
BnaC08g25970D
Coordinates
chrLK031799:-:192082..192930
Molecular Weight (calculated)
32152.5 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.776
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSPSSSSS RNNKKVNKFS VRKQTLFKKP STSLLMRQET ILRKAGELST LCDNLICVIH YDRLGNLVKT WPEDESQVQV IAERYSKLTH EEKQKKSTNL
101: SKFCNKKMHD EKKRFPIKFS QKVQELEGSL VGKLPLLQDI LLREDQSIMS EQNHNFPNYS SVPDHQQQSE SATSTEQDMS RGDVYDSAAA TDQLLNHQSK
201: YSIFLFNHEN ASFTQLPHSV SSSLQQTYYN NLSDNRALLG GQGFNFGFGN NNVSTALPEE QVNFGYYNNS LNFGYDFNNL CT
101: SKFCNKKMHD EKKRFPIKFS QKVQELEGSL VGKLPLLQDI LLREDQSIMS EQNHNFPNYS SVPDHQQQSE SATSTEQDMS RGDVYDSAAA TDQLLNHQSK
201: YSIFLFNHEN ASFTQLPHSV SSSLQQTYYN NLSDNRALLG GQGFNFGFGN NNVSTALPEE QVNFGYYNNS LNFGYDFNNL CT
001: MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REETMFKKAL ELSTLCDIEV CVIYYGRDGE LIKTWPEDQS KVRDMAERFS KLHERERRKK
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
101: RTNLSLFLRK KILDDNKLSE KVLEMKDSLE SGLRVLQDKL LLLQPENQTE LGQSRAVSST TNPLSSPEDH HHQQWTEPLV TGVSNTEQDL STSPLSNHQS
201: KYSVFVYNHD SGSFYQVPDS ICF
Arabidopsis Description
AGL89AGAMOUS-like 89 [Source:UniProtKB/TrEMBL;Acc:Q7XJL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.