Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028020.1-P | Field mustard | nucleus | 97.34 | 97.34 |
| CDX73409 | Canola | nucleus | 73.38 | 83.91 |
| CDY40199 | Canola | nucleus | 68.44 | 68.97 |
| CDY63010 | Canola | plastid | 12.17 | 51.61 |
| CDX73406 | Canola | plastid | 47.15 | 43.97 |
| CDX93744 | Canola | nucleus | 46.01 | 42.46 |
| CDX93708 | Canola | nucleus | 33.84 | 32.25 |
| AT5G26865.1 | Thale cress | nucleus | 15.21 | 31.75 |
| AT5G27050.1 | Thale cress | nucleus | 14.07 | 30.83 |
| AT5G27580.1 | Thale cress | nucleus | 24.71 | 29.15 |
| CDX93682 | Canola | nucleus | 26.24 | 28.51 |
| AT5G27944.1 | Thale cress | nucleus | 23.57 | 27.68 |
| CDY27890 | Canola | nucleus | 33.46 | 27.59 |
| CDY63012 | Canola | cytosol | 20.53 | 27.0 |
| AT5G27090.1 | Thale cress | nucleus, plastid | 17.49 | 24.6 |
| AT5G26950.1 | Thale cress | nucleus | 26.24 | 23.88 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 30.8 | 23.82 |
| AT5G27070.1 | Thale cress | nucleus | 24.71 | 22.65 |
| CDY56522 | Canola | nucleus | 19.39 | 21.89 |
| CDX95509 | Canola | plastid | 20.53 | 18.69 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 16.35 | 17.48 |
| CDY28851 | Canola | nucleus | 18.63 | 17.25 |
| CDY36817 | Canola | plastid | 18.25 | 16.44 |
| CDY65583 | Canola | plastid | 17.49 | 16.03 |
| CDY36823 | Canola | nucleus | 17.87 | 15.41 |
| CDY44595 | Canola | nucleus | 18.63 | 15.36 |
| CDY30838 | Canola | nucleus | 20.15 | 14.8 |
| CDY44599 | Canola | nucleus | 18.63 | 14.58 |
| CDY68883 | Canola | nucleus | 16.35 | 14.48 |
| CDX99332 | Canola | plastid | 19.39 | 14.33 |
| CDX92256 | Canola | plastid | 19.77 | 14.05 |
| CDY18533 | Canola | nucleus | 3.8 | 13.7 |
| CDY37821 | Canola | nucleus | 13.69 | 13.04 |
| CDY33964 | Canola | nucleus | 14.07 | 12.8 |
| CDY67867 | Canola | mitochondrion | 19.01 | 11.85 |
| CDY44597 | Canola | nucleus | 7.98 | 8.86 |
| CDX75976 | Canola | mitochondrion, nucleus | 5.32 | 6.9 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078E2N4 | EnsemblPlants:CDX93743 | ProteinID:CDX93743 | ProteinID:CDX93743.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00156464001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF350 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDE0DB |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g23430D
Coordinates
chrLK031877:+:333170..334044
Molecular Weight (calculated)
29791.6 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.700
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSTSSS RNKKVKLSVR KQTLFKKSSI NLLMRQETIL KKAGELSTLC GNEICVIHYD RVGNLVRTWP EDESQVQNMH DEKKRSPIEF SQKVEDLEGS
101: LVYKLQLLQD MMLREDHHAE PDQSITNLLR TGPTSTEQDL SRGDVYNSTA TGSLNHQSKY SIFMFNHENT TLSQLPHSSL EQSLIPSYYN NINDSRTLLG
201: AHGFNDNNNL STTQGFFNFG YDNNALPEEQ VNFGYYNSLL GTQGFGGYDI NLNYTQGFNN LCT
101: LVYKLQLLQD MMLREDHHAE PDQSITNLLR TGPTSTEQDL SRGDVYNSTA TGSLNHQSKY SIFMFNHENT TLSQLPHSSL EQSLIPSYYN NINDSRTLLG
201: AHGFNDNNNL STTQGFFNFG YDNNALPEEQ VNFGYYNSLL GTQGFGGYDI NLNYTQGFNN LCT
001: MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
101: GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE
Arabidopsis Description
AGL54AGAMOUS-like 54 [Source:UniProtKB/TrEMBL;Acc:Q9S9U2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.