CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70208
CDX80577
CDX88231
CDY05333
CDY05514
CDY05515
CDY12872
CDY25046
CDY40477
CDY44873
CDY50584
CDY54756
CDY67043
CDY70782
CDY71564
CDY71896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18650.1	CDX80577	AT1G31640.1	15805477
AT3G18650.1	CDX88231	AT1G31640.1	15805477
AT3G18650.1	CDY05333	AT1G31640.1	15805477
AT3G18650.1	CDY05514	AT1G31640.1	15805477
AT3G18650.1	CDY05515	AT1G31640.1	15805477
AT3G18650.1	CDY67043	AT1G31640.1	15805477
AT3G18650.1	CDY70782	AT1G31640.1	15805477
AT3G18650.1	CDY71564	AT1G31640.1	15805477
AT3G18650.1	CDY71896	AT1G31640.1	15805477
AT3G18650.1	CDX70208	AT1G46408.1	15805477
AT3G18650.1	CDY44873	AT1G46408.1	15805477
AT3G18650.1	CDY25046	AT1G48150.1	15805477
AT3G18650.1	CDY50584	AT1G48150.1	15805477
AT3G18650.1	CDY12872	AT1G60880.1	15805477
AT3G18650.1	CDY40477	AT1G60880.1	15805477
AT3G18650.1	CDY54756	AT1G60880.1	15805477
AT3G18650.1	CDY12872	AT1G60920.1	15805477
AT3G18650.1	CDY40477	AT1G60920.1	15805477
AT3G18650.1	CDY54756	AT1G60920.1	15805477
AT3G18650.1	CDX70208	AT5G04640.1	15805477
AT3G18650.1	CDY44873	AT5G04640.1	15805477
AT3G18650.1	CDY25046	AT5G27130.1	15805477
AT3G18650.1	CDY50584	AT5G27130.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92256	Canola	plastid	75.28	72.43
CDY18534	Canola	mitochondrion, nucleus, plastid	44.38	64.23
CDX95509	Canola	plastid	46.35	57.09
CDX75976	Canola	mitochondrion, nucleus	29.78	52.22
AT3G18650.1	Thale cress	plastid	44.38	40.93
CDY63010	Canola	plastid	5.62	32.26
CDY65583	Canola	plastid	20.79	25.78
CDY36817	Canola	plastid	21.07	25.68
CDY36823	Canola	nucleus	21.35	24.92
CDY68883	Canola	nucleus	20.51	24.58
CDY44599	Canola	nucleus	23.03	24.4
CDY63012	Canola	cytosol	13.48	24.0
CDX93682	Canola	nucleus	16.01	23.55
CDY37821	Canola	nucleus	18.26	23.55
CDY44595	Canola	nucleus	20.79	23.2
CDX93744	Canola	nucleus	18.54	23.16
CDX93708	Canola	nucleus	17.42	22.46
CDX73406	Canola	plastid	17.7	22.34
CDY40199	Canola	nucleus	16.01	21.84
CDY33964	Canola	nucleus	17.7	21.8
CDY30838	Canola	nucleus	21.35	21.23
CDX73409	Canola	nucleus	13.2	20.43
CDY27890	Canola	nucleus	18.26	20.38
CDX93743	Canola	nucleus	14.33	19.39
CDY56522	Canola	nucleus	12.36	18.88
CDY28851	Canola	nucleus	14.61	18.31
CDY40595	Canola	cytosol, golgi, vacuole	16.01	16.76
CDY67867	Canola	mitochondrion	18.26	15.4
CDY18533	Canola	nucleus	2.81	13.7
CDY44597	Canola	nucleus	7.02	10.55

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078EE36	EnsemblPlants:CDX99332	ProteinID:CDX99332	ProteinID:CDX99332.1
ncoils:Coil	GO:GO:0000982	GO:GO:0000987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00107626001	InterPro:IPR002100
InterPro:IPR036879	InterPro:MADS_SRF-like	PFAM:PF00319	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF350
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EE6A22	SEG:seg

Description

BnaC05g34470D

Coordinates

chrLK031909:+:1201198..1202268

Molecular Weight (calculated)

40720.9 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.799

Length

356 amino acids

Sequence
(BLAST)

001: MASSSSFLPS SSSLVRQNHF QKTSSLKATS LAKRQVTVFK KARELSILCG IEVCVIYYGS DGELKTWPKD REKVKDMARR YSQLSDMKRR KGQDDLDKFL
101: KKINKEDSKK KKVKVESSCK YLDWDPRFDN CSVEQLTELI QSLEHSETKL QHRLRCAVES QRQRNMYYTT MAGQEQMNHL QQHSDQVSMD QYNHGTGTLP
201: QLPVSTSAFN QSQSLAPLPN SLTIHHNPNM ESYSRLLGVQ ETGMNELLSM TMLPYNNINT NNVNVFPNQF HQNSYNMEDY SGFLGGINNV SSEDYSGLLW
301: TQGTGISGLQ NMDMFGYNNN NNNAYGFSNQ LVQYQGQRAP PGFQYMDRST QNIRPL

Best Arabidopsis Sequence Match ( AT3G18650.1 )
(BLAST)

001: MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD
101: LHEFLEKMNK DDPEKEEKKK IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN MANQELMMAN TMNQLQQHSN
201: QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE
301: DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV QFPTYNSQHQ DRVFNLDQNG NNTRSL

Arabidopsis Description

AGL103Agamous-like MADS-box protein AGL103 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.