Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68883 | Canola | nucleus | 65.75 | 64.65 |
| CDY36823 | Canola | nucleus | 57.88 | 55.41 |
| CDY65583 | Canola | plastid | 54.45 | 55.4 |
| CDY44595 | Canola | nucleus | 58.22 | 53.29 |
| CDY44599 | Canola | nucleus | 59.59 | 51.79 |
| CDY30838 | Canola | nucleus | 58.22 | 47.49 |
| AT5G40220.1 | Thale cress | nucleus | 40.41 | 36.42 |
| AT5G41200.1 | Thale cress | nucleus, plastid | 39.73 | 35.15 |
| CDY44597 | Canola | nucleus | 28.08 | 34.6 |
| AT5G39750.1 | Thale cress | nucleus | 40.41 | 33.24 |
| AT5G37415.1 | Thale cress | nucleus | 33.56 | 31.01 |
| AT5G39810.1 | Thale cress | plastid | 33.22 | 29.48 |
| AT5G38740.1 | Thale cress | nucleus | 42.47 | 29.11 |
| AT5G40120.1 | Thale cress | nucleus | 38.01 | 28.83 |
| CDY63010 | Canola | plastid | 5.82 | 27.42 |
| CDY37821 | Canola | nucleus | 25.0 | 26.45 |
| CDY18534 | Canola | mitochondrion, nucleus, plastid | 21.23 | 25.2 |
| CDY33964 | Canola | nucleus | 24.32 | 24.57 |
| CDY18533 | Canola | nucleus | 5.48 | 21.92 |
| CDX99332 | Canola | plastid | 25.68 | 21.07 |
| CDY63012 | Canola | cytosol | 14.38 | 21.0 |
| CDX95509 | Canola | plastid | 19.52 | 19.72 |
| CDX92256 | Canola | plastid | 24.66 | 19.46 |
| CDX93708 | Canola | nucleus | 17.47 | 18.48 |
| CDX73406 | Canola | plastid | 17.81 | 18.44 |
| CDX93743 | Canola | nucleus | 16.44 | 18.25 |
| CDX93744 | Canola | nucleus | 17.81 | 18.25 |
| CDX93682 | Canola | nucleus | 15.07 | 18.18 |
| CDX73409 | Canola | nucleus | 14.04 | 17.83 |
| CDY40199 | Canola | nucleus | 15.41 | 17.24 |
| CDY27890 | Canola | nucleus | 17.12 | 15.67 |
| CDY28851 | Canola | nucleus | 14.73 | 15.14 |
| CDY67867 | Canola | mitochondrion | 21.23 | 14.69 |
| CDY56522 | Canola | nucleus | 11.3 | 14.16 |
| CDY40595 | Canola | cytosol, golgi, vacuole | 16.44 | 14.12 |
| CDX75976 | Canola | mitochondrion, nucleus | 4.11 | 5.91 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HG72 | UniProt:A0A078HG72 | EnsemblPlants:CDY36817 | ProteinID:CDY36817 |
| ProteinID:CDY36817.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00062655001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF350 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE466C |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g32100DBnaC04g32100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG72]
Coordinates
chrLK032384:-:34556..35543
Molecular Weight (calculated)
33833.8 Da
IEP (calculated)
7.419
GRAVY (calculated)
-0.677
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPRSSSCS KCSSSSSSSS YSLAATSLKS RLLTIFKKAQ ELTTLCDIEA CVIHYGPDGE MRTWPENRDI VRSLALRYIQ LDQAKRRKKS VNLYEFLNKN
101: KDNKTMLNKF KKRNVEELKY PISDHYTPDQ INQLIHSLEQ SYSKLQERRR FLAAKANLDD QSCVYDQNNN NYNFQHLCLS DYSTLHYQLM PYGGSDQNMM
201: CMVNNFQHPC VSSNTTDYSV FPLELQESVS NYELNQLMPH ELNYGFDQNM CMADTTNSCN IYPSFSHDFN PVMSSSYVDE NRLLRASTLP YL
101: KDNKTMLNKF KKRNVEELKY PISDHYTPDQ INQLIHSLEQ SYSKLQERRR FLAAKANLDD QSCVYDQNNN NYNFQHLCLS DYSTLHYQLM PYGGSDQNMM
201: CMVNNFQHPC VSSNTTDYSV FPLELQESVS NYELNQLMPH ELNYGFDQNM CMADTTNSCN IYPSFSHDFN PVMSSSYVDE NRLLRASTLP YL
001: MAIRSLPSSS RCSSSSSSSS YSLASTSLSN RLETIFKKAS ELCTLCDIEA CVIYYGPDGE LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK
101: KDKTNLEKKA KITDNDDLKT CLKNVNILKY PLADHYSPDQ VSQLIQSLEP HVSKVRERIR FVESQKHKET KPDHQSLASS SLNHQTQSLN PSQFSLFMYN
201: HGDNTLSQIP VSASNFNQDY FSALLEQSEL KSQIMKQDLC GYEQNMCMSN HGDATLSQIP LSASNLNQDF SALLQDESGL MQQELCGYDQ NMFMNNNNFQ
301: HSFVSNTQDH SAPVVQESVN NNYGLMPHVP CGYDQNLFTS DITNNNLLIN NSMFL
101: KDKTNLEKKA KITDNDDLKT CLKNVNILKY PLADHYSPDQ VSQLIQSLEP HVSKVRERIR FVESQKHKET KPDHQSLASS SLNHQTQSLN PSQFSLFMYN
201: HGDNTLSQIP VSASNFNQDY FSALLEQSEL KSQIMKQDLC GYEQNMCMSN HGDATLSQIP LSASNLNQDF SALLQDESGL MQQELCGYDQ NMFMNNNNFQ
301: HSFVSNTQDH SAPVVQESVN NNYGLMPHVP CGYDQNLFTS DITNNNLLIN NSMFL
Arabidopsis Description
AGL81Agamous-like MADS-box protein AGL81 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.