CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73406
CDX73409
CDX73678
CDX75734
CDX82513
CDX92401
CDX93682
CDX93708
CDX93743
CDX93744
CDX95314
CDY06478
CDY18533
CDY23174
CDY27890
CDY28851
CDY30838
CDY33964
CDY36817
CDY36823
CDY37821
CDY40199
CDY40595
CDY44595
CDY44597
CDY44599
CDY56522
CDY63010
CDY63012
CDY65583
CDY67867
CDY68883

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38620.1	CDY33964	AT4G11250.1	15805477
AT5G38620.1	CDY37821	AT4G11250.1	15805477
AT5G38620.1	CDX75734	AT5G26880.1	15805477
AT5G38620.1	CDX82513	AT5G26880.1	15805477
AT5G38620.1	CDX73406	AT5G27070.1	15805477
AT5G38620.1	CDX73409	AT5G27070.1	15805477
AT5G38620.1	CDX93682	AT5G27070.1	15805477
AT5G38620.1	CDX93708	AT5G27070.1	15805477
AT5G38620.1	CDX93743	AT5G27070.1	15805477
AT5G38620.1	CDX93744	AT5G27070.1	15805477
AT5G38620.1	CDY18533	AT5G27070.1	15805477
AT5G38620.1	CDY27890	AT5G27070.1	15805477
AT5G38620.1	CDY28851	AT5G27070.1	15805477
AT5G38620.1	CDY40199	AT5G27070.1	15805477
AT5G38620.1	CDY40595	AT5G27070.1	15805477
AT5G38620.1	CDY56522	AT5G27070.1	15805477
AT5G38620.1	CDY63010	AT5G27070.1	15805477
AT5G38620.1	CDY63012	AT5G27070.1	15805477
AT5G38620.1	CDY67867	AT5G27070.1	15805477
AT5G38620.1	CDX73406	AT5G27580.1	15805477
AT5G38620.1	CDX73409	AT5G27580.1	15805477
AT5G38620.1	CDX93682	AT5G27580.1	15805477
AT5G38620.1	CDX93708	AT5G27580.1	15805477
AT5G38620.1	CDX93743	AT5G27580.1	15805477
AT5G38620.1	CDX93744	AT5G27580.1	15805477
AT5G38620.1	CDY18533	AT5G27580.1	15805477
AT5G38620.1	CDY27890	AT5G27580.1	15805477
AT5G38620.1	CDY28851	AT5G27580.1	15805477
AT5G38620.1	CDY40199	AT5G27580.1	15805477
AT5G38620.1	CDY40595	AT5G27580.1	15805477
AT5G38620.1	CDY56522	AT5G27580.1	15805477
AT5G38620.1	CDY63010	AT5G27580.1	15805477
AT5G38620.1	CDY63012	AT5G27580.1	15805477
AT5G38620.1	CDY67867	AT5G27580.1	15805477
AT5G38620.1	CDY30838	AT5G38740.1	15805477
AT5G38620.1	CDY36817	AT5G38740.1	15805477
AT5G38620.1	CDY36823	AT5G38740.1	15805477
AT5G38620.1	CDY44595	AT5G38740.1	15805477
AT5G38620.1	CDY44597	AT5G38740.1	15805477
AT5G38620.1	CDY44599	AT5G38740.1	15805477
AT5G38620.1	CDY65583	AT5G38740.1	15805477
AT5G38620.1	CDY68883	AT5G38740.1	15805477
AT5G38620.1	CDY30838	AT5G40220.1	15805477
AT5G38620.1	CDY36817	AT5G40220.1	15805477
AT5G38620.1	CDY36823	AT5G40220.1	15805477
AT5G38620.1	CDY44595	AT5G40220.1	15805477
AT5G38620.1	CDY44597	AT5G40220.1	15805477
AT5G38620.1	CDY44599	AT5G40220.1	15805477
AT5G38620.1	CDY65583	AT5G40220.1	15805477
AT5G38620.1	CDY68883	AT5G40220.1	15805477
AT5G38620.1	CDY33964	AT5G65330.1	15805477
AT5G38620.1	CDY37821	AT5G65330.1	15805477
AT5G49420.1	CDY33964	AT4G11250.1	15805477
AT5G49420.1	CDY37821	AT4G11250.1	15805477
AT5G49420.1	CDX75734	AT5G26880.1	15805477
AT5G49420.1	CDX82513	AT5G26880.1	15805477
AT5G49420.1	CDX73406	AT5G27070.1	15805477
AT5G49420.1	CDX73409	AT5G27070.1	15805477
AT5G49420.1	CDX93682	AT5G27070.1	15805477
AT5G49420.1	CDX93708	AT5G27070.1	15805477
AT5G49420.1	CDX93743	AT5G27070.1	15805477
AT5G49420.1	CDX93744	AT5G27070.1	15805477
AT5G49420.1	CDY18533	AT5G27070.1	15805477
AT5G49420.1	CDY27890	AT5G27070.1	15805477
AT5G49420.1	CDY28851	AT5G27070.1	15805477
AT5G49420.1	CDY40199	AT5G27070.1	15805477
AT5G49420.1	CDY40595	AT5G27070.1	15805477
AT5G49420.1	CDY56522	AT5G27070.1	15805477
AT5G49420.1	CDY63010	AT5G27070.1	15805477
AT5G49420.1	CDY63012	AT5G27070.1	15805477
AT5G49420.1	CDY67867	AT5G27070.1	15805477
AT5G49420.1	CDX73406	AT5G27580.1	15805477
AT5G49420.1	CDX73409	AT5G27580.1	15805477
AT5G49420.1	CDX93682	AT5G27580.1	15805477
AT5G49420.1	CDX93708	AT5G27580.1	15805477
AT5G49420.1	CDX93743	AT5G27580.1	15805477
AT5G49420.1	CDX93744	AT5G27580.1	15805477
AT5G49420.1	CDY18533	AT5G27580.1	15805477
AT5G49420.1	CDY27890	AT5G27580.1	15805477
AT5G49420.1	CDY28851	AT5G27580.1	15805477
AT5G49420.1	CDY40199	AT5G27580.1	15805477
AT5G49420.1	CDY40595	AT5G27580.1	15805477
AT5G49420.1	CDY56522	AT5G27580.1	15805477
AT5G49420.1	CDY63010	AT5G27580.1	15805477
AT5G49420.1	CDY63012	AT5G27580.1	15805477
AT5G49420.1	CDY67867	AT5G27580.1	15805477
AT5G49420.1	CDY30838	AT5G38740.1	15805477
AT5G49420.1	CDY36817	AT5G38740.1	15805477
AT5G49420.1	CDY36823	AT5G38740.1	15805477
AT5G49420.1	CDY44595	AT5G38740.1	15805477
AT5G49420.1	CDY44597	AT5G38740.1	15805477
AT5G49420.1	CDY44599	AT5G38740.1	15805477
AT5G49420.1	CDY65583	AT5G38740.1	15805477
AT5G49420.1	CDY68883	AT5G38740.1	15805477
AT5G49420.1	CDY30838	AT5G40120.1	15805477
AT5G49420.1	CDY36817	AT5G40120.1	15805477
AT5G49420.1	CDY36823	AT5G40120.1	15805477
AT5G49420.1	CDY44595	AT5G40120.1	15805477
AT5G49420.1	CDY44597	AT5G40120.1	15805477
AT5G49420.1	CDY44599	AT5G40120.1	15805477
AT5G49420.1	CDY65583	AT5G40120.1	15805477
AT5G49420.1	CDY68883	AT5G40120.1	15805477
AT5G49420.1	CDY30838	AT5G40220.1	15805477
AT5G49420.1	CDY36817	AT5G40220.1	15805477
AT5G49420.1	CDY36823	AT5G40220.1	15805477
AT5G49420.1	CDY44595	AT5G40220.1	15805477
AT5G49420.1	CDY44597	AT5G40220.1	15805477
AT5G49420.1	CDY44599	AT5G40220.1	15805477
AT5G49420.1	CDY65583	AT5G40220.1	15805477
AT5G49420.1	CDY68883	AT5G40220.1	15805477
AT5G49420.1	CDY33964	AT5G65330.1	15805477
AT5G49420.1	CDY37821	AT5G65330.1	15805477
AT5G49490.1	CDX73678	AT3G51920.1	17360592
AT5G49490.1	CDX95314	AT3G51920.1	17360592
AT5G49490.1	CDY23174	AT3G51920.1	17360592
AT5G49490.1	CDY06478	AT4G14640.1	17360592
AT5G49490.1	CDX92401	AT5G21274.1	17360592
AT5G49490.1	CDX73406	AT5G27070.1	15805477
AT5G49490.1	CDX73409	AT5G27070.1	15805477
AT5G49490.1	CDX93682	AT5G27070.1	15805477
AT5G49490.1	CDX93708	AT5G27070.1	15805477
AT5G49490.1	CDX93743	AT5G27070.1	15805477
AT5G49490.1	CDX93744	AT5G27070.1	15805477
AT5G49490.1	CDY18533	AT5G27070.1	15805477
AT5G49490.1	CDY27890	AT5G27070.1	15805477
AT5G49490.1	CDY28851	AT5G27070.1	15805477
AT5G49490.1	CDY40199	AT5G27070.1	15805477
AT5G49490.1	CDY40595	AT5G27070.1	15805477
AT5G49490.1	CDY56522	AT5G27070.1	15805477
AT5G49490.1	CDY63010	AT5G27070.1	15805477
AT5G49490.1	CDY63012	AT5G27070.1	15805477
AT5G49490.1	CDY67867	AT5G27070.1	15805477
AT5G49490.1	CDX73406	AT5G27090.1	15805477
AT5G49490.1	CDX73409	AT5G27090.1	15805477
AT5G49490.1	CDX93682	AT5G27090.1	15805477
AT5G49490.1	CDX93708	AT5G27090.1	15805477
AT5G49490.1	CDX93743	AT5G27090.1	15805477
AT5G49490.1	CDX93744	AT5G27090.1	15805477
AT5G49490.1	CDY18533	AT5G27090.1	15805477
AT5G49490.1	CDY27890	AT5G27090.1	15805477
AT5G49490.1	CDY28851	AT5G27090.1	15805477
AT5G49490.1	CDY40199	AT5G27090.1	15805477
AT5G49490.1	CDY40595	AT5G27090.1	15805477
AT5G49490.1	CDY56522	AT5G27090.1	15805477
AT5G49490.1	CDY63010	AT5G27090.1	15805477
AT5G49490.1	CDY63012	AT5G27090.1	15805477
AT5G49490.1	CDY67867	AT5G27090.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12757	Canola	nucleus	22.97	31.88
CDY16511	Canola	nucleus	32.43	26.77
CDY16529	Canola	nucleus	32.43	26.09
CDY67845	Canola	nucleus	31.08	25.94
CDX70208	Canola	nucleus	23.42	25.87
CDY50510	Canola	nucleus	26.58	25.76
CDX93668	Canola	nucleus	27.93	25.73
CDX77232	Canola	nucleus	30.63	25.56
CDY32839	Canola	nucleus	30.63	25.56
CDY44873	Canola	nucleus	22.97	25.37
CDY49671	Canola	mitochondrion, nucleus	27.03	25.32
CDY28103	Canola	plastid	26.58	23.89
CDX85396	Canola	nucleus	29.73	23.16
AT5G49490.1	Thale cress	nucleus	29.73	23.16
CDY54756	Canola	nucleus	20.27	22.73
CDY12741	Canola	nucleus	27.03	21.82
CDX85418	Canola	nucleus	24.32	20.61
CDX86226	Canola	nucleus	27.48	20.61
AT5G49420.1	Thale cress	nucleus	30.18	20.06
CDY01199	Canola	nucleus	25.68	19.39
AT5G38620.1	Thale cress	nucleus	30.18	19.2
CDX86252	Canola	nucleus	25.68	18.75
CDY40477	Canola	nucleus	20.72	18.62
CDY12872	Canola	nucleus	21.17	18.22
CDY12742	Canola	cytosol, mitochondrion, nucleus	2.7	11.11
CDY25046	Canola	nucleus	10.81	9.13
CDY50584	Canola	nucleus	10.81	9.13

Protein Annotations

EnsemblPlants:CDY46277	EnsemblPlantsGene:GSBRNA2T00083634001	ProteinID:CDY46277	ProteinID:CDY46277.1	UniParc:UPI0004EE4B8A	UniProt:A0A078I843
MapMan:35.2	:	:	:	:	:

Description

BnaC05g50660DBnaC05g50660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I843]

Coordinates

chrLK032657:-:121762..123647

Molecular Weight (calculated)

25611.9 Da

IEP (calculated)

8.680

GRAVY (calculated)

-0.252

Length

222 amino acids

Sequence
(BLAST)

001: MEISNTERLK ETRFERQREI RFLRNRDRKR KSISEFIRGS SKIDSGCSSQ IAIIATPSYS LFQVSFYSFG HSSDDAIVSA YLSGQSHVPV QEVREDLGVC
101: LAMKELGLGF WWEDERLAIS KDPEEIQDVM KSMNSLLSDA RKFLAEEAGT FSQREVVVVT DEMKGKRNVV LKYHNIANLT TSLTVSATIT LHYMHETWMI
201: LIFRQFWKVS AIKTMMILRQ PL

Best Arabidopsis Sequence Match ( AT5G49420.1 )
(BLAST)

001: MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL
101: TRNNLGLGFW WNDESLARSE NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL ILQSASPICC IPENLNEITQ
201: EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS
301: VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:Q7X9H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.