Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82513 | Canola | plastid | 83.93 | 93.43 |
| AT5G26880.1 | Thale cress | plastid | 65.9 | 76.43 |
| PGSC0003DMT400017734 | Potato | cytosol, mitochondrion, plastid | 24.26 | 65.49 |
| VIT_13s0064g01270.t01 | Wine grape | plastid | 52.79 | 64.4 |
| OQU80943 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 40.66 | 64.25 |
| KRH43478 | Soybean | plastid | 51.15 | 60.0 |
| Solyc01g086900.2.1 | Tomato | plastid | 46.89 | 55.43 |
| TraesCS7D01G244100.1 | Wheat | mitochondrion | 44.92 | 54.37 |
| TraesCS7A01G245500.1 | Wheat | mitochondrion | 44.59 | 53.97 |
| TraesCS7B01G146000.1 | Wheat | mitochondrion | 44.59 | 53.97 |
| GSMUA_Achr7P02040_001 | Banana | mitochondrion | 48.2 | 51.94 |
| HORVU7Hr1G050430.1 | Barley | extracellular | 19.67 | 51.28 |
| Zm00001d031439_P001 | Maize | mitochondrion | 46.56 | 49.31 |
| Os08t0506500-00 | Rice | mitochondrion | 35.74 | 44.67 |
| HORVU7Hr1G050390.9 | Barley | plastid | 23.61 | 28.24 |
Protein Annotations
| KEGG:00260+2.1.1.20 | Gene3D:3.40.1280.10 | MapMan:35.2 | GO:A0A078CI43 | InterPro:Alpha/beta_knot_MTases | EnsemblPlants:CDX75734 |
| ProteinID:CDX75734 | ProteinID:CDX75734.1 | GO:GO:0001510 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0008173 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00123656001 | InterPro:IPR029026 |
| HAMAP:MF_01885 | PFAM:PF00588 | PANTHER:PTHR42971 | PANTHER:PTHR42971:SF2 | MetaCyc:PWY-6004 | SUPFAM:SSF75217 |
| InterPro:SpoU_MeTrfase | UniParc:UPI0004EEAABC | SEG:seg | InterPro:tRNA_cyt/urid_MeTfrase | InterPro:tRNA_m1G_MTases_N | : |
Description
BnaC03g38170D
Coordinates
chrLK031805:-:271306..273457
Molecular Weight (calculated)
33455.0 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.297
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCGRSSLS FFIASRPFHL RQQSSDRLLP SLGLTHLNLK RRLSLSITSF STKILSPPPP PLSDKDKRSN ALPRGAGEGV KEDARSKLLQ VVLVSPQIPG
101: NTGCIARTCA ASAVGLHLVG PLGFQVDDAK VKRAGLDYWP FVVVKAHSSW AEFQEYFRKQ EGEKRMIAFT KRGTKIHSEF SYRRGDYLLF GSETSGLPPE
201: ALSDCKSELY GGGTIRIPMV ETYVRCLNLS VSVGVAVYEA SRQLNYEQIE CAPEGDSVND GFNESHLINT GAILEGAISR PYNAKWAYGR TKKTNLGVAE
301: TELTH
101: NTGCIARTCA ASAVGLHLVG PLGFQVDDAK VKRAGLDYWP FVVVKAHSSW AEFQEYFRKQ EGEKRMIAFT KRGTKIHSEF SYRRGDYLLF GSETSGLPPE
201: ALSDCKSELY GGGTIRIPMV ETYVRCLNLS VSVGVAVYEA SRQLNYEQIE CAPEGDSVND GFNESHLINT GAILEGAISR PYNAKWAYGR TKKTNLGVAE
301: TELTH
001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA
Arabidopsis Description
AGL26AGL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UI04]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.