Factsheet for Solyc01g086900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26880.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G26880.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017734	Potato	cytosol, mitochondrion, plastid	43.02	98.23
OQU80943	Sorghum	endoplasmic reticulum, extracellular, vacuole	51.94	69.43
VIT_13s0064g01270.t01	Wine grape	plastid	65.5	67.6
KRH43478	Soybean	plastid	60.47	60.0
TraesCS7A01G245500.1	Wheat	mitochondrion	58.53	59.92
TraesCS7D01G244100.1	Wheat	mitochondrion	58.53	59.92
HORVU7Hr1G050430.1	Barley	extracellular	27.13	59.83
TraesCS7B01G146000.1	Wheat	mitochondrion	58.14	59.52
GSMUA_Achr7P02040_001	Banana	mitochondrion	63.18	57.6
AT5G26880.1	Thale cress	plastid	56.98	55.89
CDX82513	Canola	plastid	55.81	52.55
Zm00001d031439_P001	Maize	mitochondrion	57.36	51.39
Os08t0506500-00	Rice	mitochondrion	47.29	50.0
CDX75734	Canola	plastid	55.43	46.89
HORVU7Hr1G050390.9	Barley	plastid	29.07	29.41

Protein Annotations

Gene3D:3.40.1280.10	MapMan:35.2	InterPro:Alpha/beta_knot_MTases	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0006950
GO:GO:0006995	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016740	InterPro:IPR029026	UniProt:K4AY83
HAMAP:MF_01885	PFAM:PF00588	PANTHER:PTHR42971	PANTHER:PTHR42971:SF2	SUPFAM:SSF75217	EnsemblPlantsGene:Solyc01g086900.2
EnsemblPlants:Solyc01g086900.2.1	InterPro:SpoU_MeTrfase	UniParc:UPI0002762F80	SEG:seg	InterPro:tRNA_cyt/urid_MeTfrase	InterPro:tRNA_m1G_MTases_N

Description

No Description!

Coordinates

chr1:+:81817159..81824460

Molecular Weight (calculated)

28316.3 Da

IEP (calculated)

8.582

GRAVY (calculated)

0.007

Length

258 amino acids

Sequence
(BLAST)

001: MERAGLKTLN TVVSPLHFRA KASIFRPLLL PQVVHNLHFP LLSSSSRLSP LRSLCVRSDA STMLNGAGGV AAQNKLLQVV LVSPQIPGNT GSIARTCAAS
101: AVGLHLVEPL GFPIDNTKLK RAGLDYWPYV VVKVHRSWDE FREYFMGQAG EKRLLAFTKR GIATHSDFSY KKGDWLVFGS ETKGLPPEAL LDCKSESLGG
201: GTLRIPMVET YVRCLNLSVS VGIAVYEASR QINYEQLQCP PDTCMDTETS FVTEDIFA

Best Arabidopsis Sequence Match ( AT5G26880.1 )
(BLAST)

001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA

Arabidopsis Description

AGL26AGL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UI04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.