CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26880.1	KRH10294	AT3G46090.1	17259181
AT5G26880.1	KRH23029	AT3G46090.1	17259181
AT5G26880.1	KRH24840	AT3G46090.1	17259181
AT5G26880.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017734	Potato	cytosol, mitochondrion, plastid	33.46	76.99
VIT_13s0064g01270.t01	Wine grape	plastid	66.92	69.6
OQU80943	Sorghum	endoplasmic reticulum, extracellular, vacuole	51.54	69.43
AT5G26880.1	Thale cress	plastid	61.92	61.22
Solyc01g086900.2.1	Tomato	plastid	60.0	60.47
TraesCS7A01G245500.1	Wheat	mitochondrion	57.31	59.13
TraesCS7D01G244100.1	Wheat	mitochondrion	57.31	59.13
TraesCS7B01G146000.1	Wheat	mitochondrion	56.92	58.73
CDX82513	Canola	plastid	60.77	57.66
HORVU7Hr1G050430.1	Barley	extracellular	25.38	56.41
GSMUA_Achr7P02040_001	Banana	mitochondrion	57.31	52.65
Zm00001d031439_P001	Maize	mitochondrion	58.08	52.43
CDX75734	Canola	plastid	60.0	51.15
Os08t0506500-00	Rice	mitochondrion	43.08	45.9
HORVU7Hr1G050390.9	Barley	plastid	27.31	27.84

Protein Annotations

EntrezGene:100813874	Gene3D:3.40.1280.10	MapMan:35.2	EMBL:ACUP02004866	InterPro:Alpha/beta_knot_MTases	EMBL:BT095395
UniProt:C6TCU8	EnsemblPlantsGene:GLYMA_08G152700	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0006950	GO:GO:0006995
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009605
GO:GO:0009987	GO:GO:0009991	GO:GO:0016740	InterPro:IPR029026	EnsemblPlants:KRH43478	ProteinID:KRH43478
ProteinID:KRH43478.1	HAMAP:MF_01885	PFAM:PF00588	PANTHER:PTHR42971	PANTHER:PTHR42971:SF2	MetaCyc:PWY-6004
SUPFAM:SSF75217	InterPro:SpoU_MeTrfase	UniParc:UPI0001B16346	SEG:seg	InterPro:tRNA_cyt/urid_MeTfrase	InterPro:tRNA_m1G_MTases_N

Description

hypothetical protein

Coordinates

chr8:+:11746458..11752421

Molecular Weight (calculated)

28824.3 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.136

Length

260 amino acids

Sequence
(BLAST)

001: MDITAFKSLN IPFPTFPSKF SPFRPFSFFH FKPFRTPSSP RFISHCSLNG SAEITSKEGT LPRGVGEAVN EASSSKILQV VLVSPQIPGN TGCIARTCAA
101: SAVGLHLVGP LGFQVDDTKL KRAGLDYWPY VVVKIHDSWE DFHNYFRQQE GEKRLLAFTK RGTKIHSEFS YRKGDYLIFG SETSGLPPEA LLDCKTEPFG
201: GGTIKIPMVE TYVRCLNLSV SVGIALYEAS RQLNYESLQV PSESCIDTTE ESFIAEDIFA

Best Arabidopsis Sequence Match ( AT5G26880.1 )
(BLAST)

001: MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR
101: TCAASAVGLH LVGPLGFQVD DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY LLFGSETSGL PPEALSDCNH
201: EPYGGGTLRI PMVETYVRCL NLSVSVGIAL YEASRQLNYE QIECAPQGCV NGEEPLLTED IFA

Arabidopsis Description

AGL26AGL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UI04]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.